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Update to version 2001.04.03; add installation of some documentation.

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Approved by:	MAINTAINER
This commit is contained in:
Johann Visagie 2001-06-20 14:25:54 +00:00
parent 5fc071c7df
commit d8c2a7d247
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=44254
5 changed files with 86 additions and 30 deletions
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14
biology/ncbi-toolkit/Makefile
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@ -6,12 +6,10 @@
#
PORTNAME= ncbi-toolkit
PORTVERSION= 2000.10.31
PORTREVISION= 1
PORTVERSION= 2001.04.03
CATEGORIES= biology
MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
DISTNAME= ncbi
DIST_SUBDIR= ncbi
MAINTAINER= tony.maher@ebioinformatics.com
@ -30,6 +28,9 @@ DUMMYMAKE= Makefile
PLATFORMDIR= ${WRKSRC}/platform
BUILDSCRIPT= ${WRKSRC}/make/makedis.csh
DOCDIR= ${PREFIX}/share/doc/${PORTNAME}
CPIO= cpio --quiet -pdum -R
#
# Thus ends the definitions
#
@ -44,4 +45,11 @@ pre-configure:
@${CP} ${FILESDIR}/freebsd.ncbi.mk ${PLATFORMDIR}
@${PERL} -pi.orig -e 's#NetBSD#FreeBSD#;' -e 's#netbsd#freebsd#' ${BUILDSCRIPT}
post-install:
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${DOCDIR}
@ cd ${WRKSRC}/doc && find * | \
${CPIO} ${SHAREOWN}:${SHAREGRP} ${DOCDIR}
.endif
.include <bsd.port.mk>

2
biology/ncbi-toolkit/distinfo
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@ -1 +1 @@
MD5 (ncbi/ncbi.tar.gz) = 7eed2d92ddd1cddd07dac5d881c21e4f
MD5 (ncbi.tar.gz) = 7bbfecf047f4e43c4e7bc292865c3485

2
biology/ncbi-toolkit/pkg-comment
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@ -1 +1 @@
National Center for Biotechnology Information (NCBI) Development Toolkit
NCBI development toolkit, including BLAST 2.0 and GenBank/Entrez support

26
biology/ncbi-toolkit/pkg-descr
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@ -1,16 +1,20 @@
"The NCBI Software Development Toolkit was developed for the production and
distribution of GenBank, Entrez, BLAST, and related services by NCBI. We
make it freely available to the public without restriction to facilitate the
use of NCBI by the scientific community. However, please understand that
while we feel we have done a high quality job, this is not commercial
software.
The documentation lags considerably behind the software and we must make any
changes required by our data production needs. Nontheless, many people have
found it a useful and stable basis for a number of tools and applications.
The NCBI (National Center for Biotechnology Information) development toolkit,
containing various libraries needed by NCBI applications, as well as a
software suite containing, amongst other things, NCBI BLAST 2.0.
The toolkit is available by anonymous ftp from ncbi.nlm.nih.gov"
From the README:
excerpt from NCBI toolkit README file.
The NCBI Software Development Toolkit was developed for the production and
distribution of GenBank, Entrez, BLAST, and related services by NCBI. We
make it freely available to the public without restriction to facilitate
the use of NCBI by the scientific community. However, please understand
that while we feel we have done a high quality job, this is not commercial
software.
The documentation lags considerably behind the software and we must make
any changes required by our data production needs. Nontheless, many people
have found it a useful and stable basis for a number of tools and
applications.
-- Tony Maher <tony.maher@ebioinformatics.com>
FreeBSD bio-porters <bio@freebsd.net>

72
biology/ncbi-toolkit/pkg-plist
View File

@ -1,3 +1,45 @@
%%PORTDOCS%%share/doc/ncbi-toolkit/FAQ.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/README.asn2xml
%%PORTDOCS%%share/doc/ncbi-toolkit/README.bcl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.bls
%%PORTDOCS%%share/doc/ncbi-toolkit/README.formatdb
%%PORTDOCS%%share/doc/ncbi-toolkit/README.imp
%%PORTDOCS%%share/doc/ncbi-toolkit/README.mbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.nbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.pbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.rps
%%PORTDOCS%%share/doc/ncbi-toolkit/README.sdk
%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/README
%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/updateHtgsDoc
%%PORTDOCS%%share/doc/ncbi-toolkit/firedialog.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.html
%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/fwd_check.sh
%%PORTDOCS%%share/doc/ncbi-toolkit/images/ncbi_sequin.css
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn01.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn02.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn03.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn04.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn05.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn06.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn07.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn08.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn09.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn10.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn11.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn12.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn13.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn14.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn15.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn16.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn17.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn18.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn19.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn20.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn21.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/ncbixml.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/sdk.doc
%%PORTDOCS%%share/doc/ncbi-toolkit/sequin.htm
bin/Nentrez
bin/Psequin
bin/asn2fast
@ -45,24 +87,26 @@ bin/testval
bin/udv
bin/vecscreen
lib/ncbi/libncbi.a
lib/ncbi/libncbicdr.a
lib/ncbi/libncbimla.a
lib/ncbi/libncbitxc2.a
lib/ncbi/libnetentr.a
lib/ncbi/libncbiCacc.a
lib/ncbi/libncbicn3d.a
lib/ncbi/libncbimmdb.a
lib/ncbi/libnetblast.a
lib/ncbi/libvibgif.a
lib/ncbi/libncbiNacc.a
lib/ncbi/libncbidesk.a
lib/ncbi/libncbiobj.a
lib/ncbi/libnetcli.a
lib/ncbi/libvibnet.a
lib/ncbi/libncbiacc.a
lib/ncbi/libncbicdr.a
lib/ncbi/libncbicn3d.a
lib/ncbi/libncbidesk.a
lib/ncbi/libncbiid1.a
lib/ncbi/libncbimla.a
lib/ncbi/libncbimmdb.a
lib/ncbi/libncbiobj.a
lib/ncbi/libncbitool.a
lib/ncbi/libncbitxc2.a
lib/ncbi/libnetblast.a
lib/ncbi/libnetcli.a
lib/ncbi/libnetcli_.a
lib/ncbi/libnetentr.a
lib/ncbi/libvibgif.a
lib/ncbi/libvibnet.a
lib/ncbi/libvibrant.a
@unexec rmdir %D/lib/ncbi
@unexec rm -rf %D/include/ncbi
@dirrm lib/ncbi
%%PORTDOCS%%@dirrm share/doc/ncbi-toolkit/images
%%PORTDOCS%%@dirrm share/doc/ncbi-toolkit/fa2htgs
%%PORTDOCS%%@dirrm share/doc/ncbi-toolkit