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biology/atac-seq: Metaport for ATAC-Seq analysis

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Metaport to install tools for typical ATAC-Seq analysis, including QC,
adapter trimming, alignment, and differential analysis.
This commit is contained in:
Jason W. Bacon 2023-01-11 17:47:02 -06:00
parent 5b7696e08b
commit d2c13cc6fd
4 changed files with 31 additions and 0 deletions
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1
biology/Makefile
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@ -3,6 +3,7 @@
SUBDIR += abyss
SUBDIR += ad2vcf
SUBDIR += artemis
SUBDIR += atac-seq
SUBDIR += augustus
SUBDIR += avida
SUBDIR += babel

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biology/atac-seq/Makefile Normal file
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PORTNAME= atac-seq
DISTVERSION= 0.1.0
CATEGORIES= biology python
MASTER_SITES= # empty
MAINTAINER= jwb@FreeBSD.org
COMMENT= Metaport for ATAC-Seq analysis
WWW= https://github.com/auerlab/
LICENSE= BSD2CLAUSE
RUN_DEPENDS= sra-tools>0:biology/sra-tools \
fastq-trim>0:biology/fastq-trim \
fastqc>0:biology/fastqc \
${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \
biolibc-tools>0:biology/biolibc-tools \
bwa>0:biology/bwa \
bowtie2>0:biology/bowtie \
samtools>0:biology/samtools \
igv>0:biology/igv \
${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \
fasda>0:biology/fasda \
peak-classifier>0:biology/peak-classifier
USES= metaport python
.include <bsd.port.mk>

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biology/atac-seq/distinfo Normal file
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TIMESTAMP = 1673480732

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biology/atac-seq/pkg-descr Normal file
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Metaport to install tools for typical ATAC-Seq analysis, including QC,
adapter trimming, alignment, and differential analysis.