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- Update to version 1.00a4

Browse Source 
PR:		33719
Submitted by:	Hye-Shik Chang <perky@fallin.lv>
This commit is contained in:
Johann Visagie 2002-01-22 10:54:02 +00:00
parent 36379c2cbb
commit ba0a0aded4
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=53537
3 changed files with 261 additions and 10 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

7
biology/py-biopython/Makefile
View File

@ -6,8 +6,7 @@
#
PORTNAME= biopython
PORTVERSION= 1.00.a3
PORTREVISION= 1
PORTVERSION= 1.00.a4
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/Download/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -74,6 +73,10 @@ PLIST_OMNIORB= "@comment "
PLIST_FNORB= "@comment "
.endif # defined(WITH_CORBA)
.if !defined(WITHOUT_REPORTLAB)
RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/reportlab/__init__.py:${PORTSDIR}/print/py-reportlab
.endif
pre-fetch:
.if !defined(BATCH) && !defined(WITH_CORBA)
@ ${CAT} ${FILESDIR}/corba.msg

2
biology/py-biopython/distinfo
View File

@ -1,2 +1,2 @@
MD5 (biopython-1.00a3.tar.gz) = be59a12eeb2c0bcdd82a73dfd7bcc615
MD5 (biopython-1.00a4.tar.gz) = bca77b4242c9a8495f60c7475b884c5d
MD5 (biopython-corba-0.3.0.tar.gz) = 4465f240d22b113314c70b1dc8ebc41c

262
biology/py-biopython/pkg-plist
View File

@ -203,17 +203,22 @@
%%PORTDOCS%%share/doc/biopython/Blast.txt
%%PORTDOCS%%share/doc/biopython/Enzyme.txt
%%PORTDOCS%%share/doc/biopython/Fasta.txt
%%PORTDOCS%%share/doc/biopython/IntelliGenetics.txt
%%PORTDOCS%%share/doc/biopython/InterPro.txt
%%PORTDOCS%%share/doc/biopython/KEGG.txt
%%PORTDOCS%%share/doc/biopython/Medline.txt
%%PORTDOCS%%share/doc/biopython/Parser.txt
%%PORTDOCS%%share/doc/biopython/Prosite.txt
%%PORTDOCS%%share/doc/biopython/References.txt
%%PORTDOCS%%share/doc/biopython/SCOP.txt
%%PORTDOCS%%share/doc/biopython/SwissProt.txt
%%PORTDOCS%%share/doc/biopython/Tutorial.pdf
%%PORTDOCS%%share/doc/biopython/Tutorial.tex
%%PORTDOCS%%share/doc/biopython/Tutorial.txt
%%PORTDOCS%%share/doc/biopython/make_api_docs.py
%%PORTDOCS%%share/doc/biopython/metatool.txt
%%PORTDOCS%%share/examples/biopython/GenBank/check_output.py
%%PORTDOCS%%share/examples/biopython/GenBank/check_output_simple.py
%%PORTDOCS%%share/examples/biopython/GenBank/find_parser_problems.py
%%PORTDOCS%%share/examples/biopython/SeqGui/SeqGui.py
%%PORTDOCS%%share/examples/biopython/clustal_run.py
%%PORTDOCS%%share/examples/biopython/fasta_consumer.py
@ -228,6 +233,7 @@
%%PORTDOCS%%share/examples/biopython/pubmed_search.py
%%PORTDOCS%%share/examples/biopython/query_entrez.py
%%PORTDOCS%%share/examples/biopython/query_pubmed.py
%%PORTDOCS%%share/examples/biopython/scop_pdb.py
%%PORTDOCS%%share/examples/biopython/swissprot.py
%%PORTDOCS%%share/examples/biopython/www_blast.py
%%PORTDOCS%%share/examples/biopython/xbbtools/README
@ -236,7 +242,9 @@
%%PORTDOCS%%share/examples/biopython/xbbtools/testrp.fas
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_blast.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_blastbg.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_help.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_io.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_search.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_sequence.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_translations.py
%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_utils.py
@ -254,6 +262,8 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/Generic.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/cfastpairwise.so
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/csupport.so
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/fastpairwise.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/fastpairwise.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/fastpairwise.pyo
@ -269,6 +279,12 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/IUPAC.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Application/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Application/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Application/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Applications.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Applications.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Applications.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.pyo
@ -296,6 +312,21 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/IUPACData.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Applications.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Applications.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Applications.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Primer.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Primer.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Primer.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primer3_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primer3_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primer3_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primersearch_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primersearch_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primersearch_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/IUPACEncoding.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/IUPACEncoding.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/IUPACEncoding.pyo
@ -323,6 +354,54 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/File.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/File.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/File.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/General.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/General.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/General.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/Point.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/Point.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/Point.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Evolver.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Evolver.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Evolver.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/General.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/General.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/General.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/Simple.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/Simple.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/Simple.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Organism.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Organism.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Organism.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/Stabilizing.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/Stabilizing.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/Stabilizing.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Abstract.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Abstract.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Abstract.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Diversity.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Diversity.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Diversity.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/RouletteWheel.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/RouletteWheel.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/RouletteWheel.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Tournament.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Tournament.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Tournament.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/LocationParser.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/LocationParser.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/LocationParser.pyo
@ -335,12 +414,54 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/genbank_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/genbank_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/genbank_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/utils.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/utils.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/utils.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/BasicChromosome.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/BasicChromosome.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/BasicChromosome.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Comparative.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Comparative.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Comparative.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/DisplayRepresentation.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/DisplayRepresentation.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/DisplayRepresentation.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Distribution.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Distribution.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Distribution.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/DynamicProgramming.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/DynamicProgramming.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/DynamicProgramming.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/MarkovModel.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/MarkovModel.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/MarkovModel.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Trainer.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Trainer.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Trainer.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Utilities.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Utilities.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Utilities.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/Record.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/Record.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/Record.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/intelligenetics_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/intelligenetics_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/intelligenetics_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro/__init__.pyo
@ -356,6 +477,12 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/enzyme_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/enzyme_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/enzyme_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/map_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/map_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/map_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/__init__.pyo
@ -368,18 +495,99 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/NLMMedlineXML.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/NLMMedlineXML.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/NLMMedlineXML.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_001211_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_001211_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_001211_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_010319_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_010319_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_010319_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_011101_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_011101_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_011101_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Input.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Input.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Input.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Record.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Record.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Record.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/metatool_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/metatool_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/metatool_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/Record.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/Record.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/Record.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/ValSeq.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/ValSeq.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/ValSeq.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/nbrf_format.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/nbrf_format.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/nbrf_format.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/Network.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/Network.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/Network.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Motif.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Motif.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Motif.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Pattern.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Pattern.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Pattern.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Schema.py
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lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Schema.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Signature.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Signature.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/Signature.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/StopTraining.py
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lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/StopTraining.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Training.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Training.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Training.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/ParserSupport.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/ParserSupport.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/ParserSupport.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/HashSet.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/HashSet.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/HashSet.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/MultiGraph.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/MultiGraph.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/MultiGraph.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/PropertyManager.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/PropertyManager.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/PropertyManager.pyo
@ -401,15 +609,27 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Cla.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Cla.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Cla.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Des.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Des.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Des.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Lin.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Lin.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Lin.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Location.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Location.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Location.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/FileIndex.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/FileIndex.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/FileIndex.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Hie.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Hie.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Hie.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Raf.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Raf.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Raf.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Residues.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Residues.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Residues.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/__init__.pyo
@ -425,6 +645,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/FASTA.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/generic.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/generic.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/generic.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.pyo
@ -446,6 +669,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/SProt.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/LogisticRegression.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/LogisticRegression.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/LogisticRegression.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/MaxEntropy.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/MaxEntropy.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/MaxEntropy.pyo
@ -516,6 +742,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/UniGene/__init__.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/InterPro.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/InterPro.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/InterPro.pyo
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.pyc
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.pyo
@ -547,22 +776,40 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Compound
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Data
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Clustalw
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Application
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Align
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio
@ -570,6 +817,7 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo
%%PORTDOCS%%%%PLIST_CORBA%%@dirrm share/doc/biopython/BioCorba
%%PORTDOCS%%@dirrm share/examples/biopython/xbbtools
%%PORTDOCS%%@dirrm share/examples/biopython/SeqGui
%%PORTDOCS%%@dirrm share/examples/biopython/GenBank
%%PORTDOCS%%@dirrm share/examples/biopython
%%PORTDOCS%%@dirrm share/doc/biopython
%%PLIST_OMNIORB%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/bsane__POA/seqcore