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In preparation for making libtool generate libraries with a sane name, fix all

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LIB_DEPENDS in biology
This commit is contained in:
Baptiste Daroussin 2013-12-11 14:43:51 +00:00
parent 5b8821079e
commit a2275161bd
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=336171
12 changed files with 19 additions and 19 deletions
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2
biology/crux/Makefile
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@ -31,7 +31,7 @@ USE_FORTRAN= yes
.if ${PORT_OPTIONS:MSYS_LINALG}
CONFIGURE_ARGS+= --enable-sys-linalg
LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
LIB_DEPENDS+= libatlas.so:${PORTSDIR}/math/atlas
.else
CONFIGURE_ARGS+= --disable-sys-linalg
.endif

2
biology/embassy/Makefile
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@ -11,7 +11,7 @@ DIST_SUBDIR= emboss
MAINTAINER= wen@FreeBSD.org
COMMENT= Collection of contributed EMBOSS applications
LIB_DEPENDS= nucleus.6:${PORTSDIR}/biology/emboss
LIB_DEPENDS= libnucleus.so:${PORTSDIR}/biology/emboss
PREFIX?= ${LOCALBASE}/emboss
NO_MTREE= yes

8
biology/emboss/Makefile
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@ -15,8 +15,8 @@ COMMENT= A collection of open source tools for genetic sequence analysis
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \
primer3:${PORTSDIR}/biology/primer3
LIB_DEPENDS= gd:${PORTSDIR}/graphics/gd \
png15:${PORTSDIR}/graphics/png
LIB_DEPENDS= libgd.so:${PORTSDIR}/graphics/gd \
libpng15.so:${PORTSDIR}/graphics/png
CONFLICTS= qmail-ldap-[0-9]* digest-[0-9]*
@ -38,8 +38,8 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
.if !defined(WITHOUT_X11)
USE_XORG= x11
USES+= motif
LIB_DEPENDS+= gd:${PORTSDIR}/graphics/gd \
png15:${PORTSDIR}/graphics/png
LIB_DEPENDS+= libgd.so:${PORTSDIR}/graphics/gd \
libpng15.so:${PORTSDIR}/graphics/png
.else
CONFIGURE_ARGS+= --without-x
.endif

2
biology/iolib/Makefile
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@ -13,7 +13,7 @@ COMMENT= General purpose trace file (and Experiment File) reading interface
LICENSE= BSD
LIB_DEPENDS= curl:${PORTSDIR}/ftp/curl
LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl
USE_AUTOTOOLS= libtool:env
GNU_CONFIGURE= yes

2
biology/libsbml/Makefile
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@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}-src
MAINTAINER= wen@FreeBSD.org
COMMENT= API Library for Working with SBML File
LIB_DEPENDS= xml2.5:${PORTSDIR}/textproc/libxml2
LIB_DEPENDS= libxml2.so:${PORTSDIR}/textproc/libxml2
OPTIONS_DEFINE= PYTHON RUBY

2
biology/mopac/Makefile
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@ -12,7 +12,7 @@ DISTNAME= ${PORTNAME}7-${MOPAC_SUBVERSION}
MAINTAINER= ports@FreeBSD.org
COMMENT= Semi-empirical (MNDO, etc.) molecular orbital calculation
LIB_DEPENDS= f2c:${PORTSDIR}/lang/f2c
LIB_DEPENDS= libf2c.so:${PORTSDIR}/lang/f2c
USE_GMAKE= yes
USE_AUTOTOOLS= aclocal automake autoconf libtool

2
biology/ortep3/Makefile
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@ -13,7 +13,7 @@ EXTRACT_ONLY= ortep.tar.Z
MAINTAINER= ports@FreeBSD.org
COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
PGPLOT_LIB_DEPENDS= pgplot:${PORTSDIR}/graphics/pgplot
PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot
USE_FORTRAN= yes
WRKSRC= ${WRKDIR}/ortep/src

2
biology/plink/Makefile
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@ -13,7 +13,7 @@ COMMENT= Whole genome association analysis toolset
LICENSE= GPLv2
LIB_DEPENDS= lapack:${PORTSDIR}/math/lapack
LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack
USE_ZIP= yes
USE_GMAKE= yes

2
biology/plinkseq/Makefile
View File

@ -12,7 +12,7 @@ COMMENT= Toolset for working with human genetic variation data
LICENSE= GPLv2
LIB_DEPENDS= protobuf:${PORTSDIR}/devel/protobuf
LIB_DEPENDS= libprotobuf.so:${PORTSDIR}/devel/protobuf
USE_DOS2UNIX= yes
USE_LDCONFIG= yes

6
biology/protomol/Makefile
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@ -12,9 +12,9 @@ EXTRACT_SUFX= # empty
MAINTAINER= sangwoos@gmail.com
COMMENT= OO, component based, framework for molecular dynamics (MD) simulations
LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \
jpeg.11:${PORTSDIR}/graphics/jpeg \
tiff.4:${PORTSDIR}/graphics/tiff
LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png \
libjpeg.so:${PORTSDIR}/graphics/jpeg \
libtiff.so:${PORTSDIR}/graphics/tiff
GNU_CONFIGURE= yes
USE_XORG= xmu xt sm ice xext x11 xi

4
biology/pymol/Makefile
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@ -13,8 +13,8 @@ COMMENT= Free and Open-Source molecular modeling system
BUILD_DEPENDS= ${PYNUMERIC}
RUN_DEPENDS= ${PYNUMERIC} \
${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw
LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \
freetype.9:${PORTSDIR}/print/freetype2
LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png \
libfreetype.so:${PORTSDIR}/print/freetype2
VERSION= 1.5.0.1
SVNREVISION= 3978

4
biology/seaview/Makefile
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@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}_${PORTVERSION}
MAINTAINER= ports@FreeBSD.org
COMMENT= Multiple DNA/protein sequence alignment editor
LIB_DEPENDS= fltk:${PORTSDIR}/x11-toolkits/fltk
LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk
OPTIONS_DEFINE= PDFLIB
OPTIONS_DEFAULT=PDFLIB
@ -39,7 +39,7 @@ NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MPDFLIB}
LIB_DEPENDS+= pdf:${PORTSDIR}/print/pdflib
LIB_DEPENDS+= libpdf.so:${PORTSDIR}/print/pdflib
MAKE_ENV+= LPDF='-L${LOCALBASE}/lib -lpdf'
.else
MAKE_ENV+= PDF_PS_FLAGS='-DNO_PDF'