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Update biology/ncbi-toolkit to the latest release.

Browse Source 
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
 blastall now uses the new engine by default, resulting
 in significant performance improvements and enabling
 query concatenation for all program types.

PR:		ports/98570
Submitted by:	maintainer
Approved by:	lawrance (mentor, implict)
This commit is contained in:
Ion-Mihai Tetcu 2006-06-06 12:05:19 +00:00
parent 6cbf14af25
commit 9da018b5cc
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=164601
3 changed files with 11 additions and 5 deletions
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2
biology/ncbi-toolkit/Makefile
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@ -7,7 +7,7 @@
# #
PORTNAME= ncbi-toolkit PORTNAME= ncbi-toolkit
PORTVERSION= 2005.12.06 PORTVERSION= 2006.05.07 # containing BLAST v2.2.14
CATEGORIES= biology CATEGORIES= biology
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/ MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
DISTNAME= ncbi DISTNAME= ncbi

6
biology/ncbi-toolkit/distinfo
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@ -1,3 +1,3 @@
MD5 (ncbi-toolkit-2005.12.06/ncbi.tar.gz) = 50a83a509b67fd8f317b0da42703de1d MD5 (ncbi-toolkit-2006.05.07/ncbi.tar.gz) = 1c00462385fbf382c99ff65f34c0d09a
SHA256 (ncbi-toolkit-2005.12.06/ncbi.tar.gz) = 0b409557d6601b8703328cd1ae997985677416e9ad9375e57b298113ecaaeeda SHA256 (ncbi-toolkit-2006.05.07/ncbi.tar.gz) = b3cac971d552b2ad86ee7d82e77e6a425b98b33a7b6f1c77062aff133e34d129
SIZE (ncbi-toolkit-2005.12.06/ncbi.tar.gz) = 14693833 SIZE (ncbi-toolkit-2006.05.07/ncbi.tar.gz) = 15396356

8
biology/ncbi-toolkit/pkg-plist
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@ -58,7 +58,9 @@ include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_host_info.h include/ncbi/connect/ncbi_host_info.h
include/ncbi/connect/ncbi_host_infop.h include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_lb.h
include/ncbi/connect/ncbi_lbsmd.h include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_local.h
include/ncbi/connect/ncbi_memory_connector.h include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h include/ncbi/connect/ncbi_sendmail.h
@ -438,6 +440,7 @@ include/ncbi/seqsplit.h
include/ncbi/seqsub.h include/ncbi/seqsub.h
include/ncbi/sequtil.h include/ncbi/sequtil.h
include/ncbi/shim3d.h include/ncbi/shim3d.h
include/ncbi/showalignwrap.h
include/ncbi/simple.h include/ncbi/simple.h
include/ncbi/simutil.h include/ncbi/simutil.h
include/ncbi/smith_waterman.h include/ncbi/smith_waterman.h
@ -485,6 +488,7 @@ include/ncbi/udvdef.h
include/ncbi/udviewer.h include/ncbi/udviewer.h
include/ncbi/udvseq.h include/ncbi/udvseq.h
include/ncbi/undefwin.h include/ncbi/undefwin.h
include/ncbi/unified_pvalues.h
include/ncbi/urkbias.h include/ncbi/urkbias.h
include/ncbi/urkcnsrt.h include/ncbi/urkcnsrt.h
include/ncbi/urkdust.h include/ncbi/urkdust.h
@ -619,7 +623,6 @@ lib/ncbi/libvibrant.a
%%PORTDOCS%%%%DOCSDIR%%/man/Nentrez.1 %%PORTDOCS%%%%DOCSDIR%%/man/Nentrez.1
%%PORTDOCS%%%%DOCSDIR%%/man/Psequin.1 %%PORTDOCS%%%%DOCSDIR%%/man/Psequin.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2asn.1 %%PORTDOCS%%%%DOCSDIR%%/man/asn2asn.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2gb.1 %%PORTDOCS%%%%DOCSDIR%%/man/asn2gb.1
%%PORTDOCS%%%%DOCSDIR%%/man/asn2xml.1 %%PORTDOCS%%%%DOCSDIR%%/man/asn2xml.1
%%PORTDOCS%%%%DOCSDIR%%/man/asndhuff.1 %%PORTDOCS%%%%DOCSDIR%%/man/asndhuff.1
@ -699,6 +702,9 @@ lib/ncbi/libvibrant.a
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-netscape.css %%PORTDOCS%%%%DOCSDIR%%/seq_install/win-netscape.css
%%PORTDOCS%%%%DOCSDIR%%/sequin.htm %%PORTDOCS%%%%DOCSDIR%%/sequin.htm
%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt %%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt
%%DATADIR%%/16Score.nhr
%%DATADIR%%/16Score.nin
%%DATADIR%%/16Score.nsq
%%DATADIR%%/BLOSUM45 %%DATADIR%%/BLOSUM45
%%DATADIR%%/BLOSUM62 %%DATADIR%%/BLOSUM62
%%DATADIR%%/BLOSUM80 %%DATADIR%%/BLOSUM80