- Update to 5.1.09
PR: 154359 Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru> Feature safe: yes
This commit is contained in:
parent
b344c7f3cc
commit
9d6770ef98
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=268481
@ -6,14 +6,9 @@
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#
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PORTNAME= tinker
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PORTVERSION= 4.2.20040908
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PORTREVISION= 5
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PORTVERSION= 5.1.09
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.tu-chemnitz.de/.SAN0/pub/FreeBSD/ports/distfiles/RESTRICTED/${PORTNAME}-${PORTVERSION}/\
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ftp://ftp.tw.freebsd.org/pub/ports/distfiles/${PORTNAME}-${PORTVERSION}/ \
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ftp://ftp.uvsq.fr/pub/FreeBSD/ports/distfiles/RESTRICTED/${PORTNAME}-${PORTVERSION}/
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DISTNAME= ${PORTNAME}
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DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
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MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
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MAINTAINER= ports@FreeBSD.org
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COMMENT= A general purpose molecular modelling package
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@ -27,10 +22,9 @@ ALL_TARGET= all listing
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INSTALL_TARGET= rename
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RESTRICTED= author requests no distribution except from his FTP site
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DOCS= README *.pdf *.txt release*
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SAMPLES= README clean.make *.1st *.boat *.cell *.chair *.dat *.dyn0 \
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*.key *.log *.pdb *.run *.xyz
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BENCHES= README *.dyn0 *.log *.key *.run *.xyz results*
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DOCS= 0README *.pdf *.txt announce/release*
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SAMPLES= 0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.run *.xyz
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BENCHES= 0README *.dyn0 *.log *.key *.run *.xyz results*
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.include <bsd.port.pre.mk>
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@ -43,21 +37,6 @@ FFLAGS+= -mfancy-math-387 -malign-double
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.endif # i386
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.endif
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.if defined(WITH_VIEWER)
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BUILD_DEPENDS+= imake:${PORTSDIR}/devel/imake
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USE_XORG= x11 xext xi
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PLIST_SUB+= WITH_VIEWER=""
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post-build:
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@${SETENV} ${SCRIPTS_ENV} ${SH} ${SCRIPTDIR}/build_viewer
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.else
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PLIST_SUB+= WITH_VIEWER="@comment "
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pre-extract:
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@${ECHO_MSG} ""
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@${ECHO_MSG} If you would like to also build
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@${ECHO_MSG} the molecular viewer, define WITH_VIEWER.
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@${ECHO_MSG} ""
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.endif
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pre-everything::
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.if !defined(WITH_OPTIMIZED_FLAGS)
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@${ECHO_MSG} "You can optimize by setting WITH_OPTIMIZED_FLAGS=yes."
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@ -84,13 +63,6 @@ post-install:
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@${INSTALL_DATA} ${SAMPLES:S|^|${WRKDIR}/tinker/example/|} ${EXAMPLESDIR}
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@${INSTALL_DATA} ${BENCHES:S|^|${WRKDIR}/tinker/bench/|} ${DATADIR}/bench
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@${INSTALL_DATA} ${WRKDIR}/tinker/test/* ${DATADIR}/test
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.endif
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.if defined(WITH_VIEWER)
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@${MKDIR} ${DATADIR}/rasmol
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@${INSTALL_PROGRAM} ${WRKDIR}/tinker/rasmol/tview-* ${PREFIX}/bin
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@${INSTALL_SCRIPT} ${FILESDIR}/tview ${PREFIX}/bin
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@${INSTALL_DATA} ${WRKDIR}/tinker/rasmol/rasmol.hlp \
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${DATADIR}/rasmol
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.endif
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@${ECHO_MSG} ""
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@${ECHO_MSG} " **********************************************************"
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|
@ -1,3 +1,2 @@
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MD5 (tinker-4.2.20040908/tinker.tar.gz) = 5618d8a373896f00e452b137200223fd
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SHA256 (tinker-4.2.20040908/tinker.tar.gz) = ad0cc9782dabdb0cce490fe26508761a36078e741f019090cbaa3e6cacf71055
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SIZE (tinker-4.2.20040908/tinker.tar.gz) = 8177555
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SHA256 (tinker-5.1.09.tar.gz) = 61765adfe260e3f3083243542dac49d38141191d5d6580e9a66a29c31d5a3183
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SIZE (tinker-5.1.09.tar.gz) = 14071638
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@ -1,5 +1,5 @@
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--- ../make/Makefile.orig Thu Aug 19 17:37:44 2004
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+++ ../make/Makefile Thu Aug 19 22:52:41 2004
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--- ../make/Makefile.orig 2010-08-25 00:58:16.000000000 +0400
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+++ ../make/Makefile 2011-01-22 01:12:41.000000000 +0300
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@@ -9,8 +9,8 @@
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##
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## 1. make all Build all the TINKER executables
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@ -15,7 +15,7 @@
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## LINKDIR Linked Copies of TINKER Executables
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##
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-TINKERDIR = /user/ponder/tinker
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-TINKERDIR = /Users/ponder/tinker
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-BINDIR = $(TINKERDIR)/bin
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-LINKDIR = /usr/local/bin
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+TINKERDIR = ${WRKDIR}
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@ -24,11 +24,10 @@
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####################################################################
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## Known Machine Types; Uncomment One of the Following Sections ##
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@@ -122,6 +122,20 @@
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#LIBFLAGS = -crusv
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#LINKFLAGS =
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@@ -40,6 +40,20 @@
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####################################################################
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+##
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##
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+## Machine: IntelPC / FreeBSD
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+## CPU Type: Intel, AMD, Cyrix
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+## Oper Sys: FreeBSD 4.2
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@ -42,10 +41,30 @@
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+OPTFLAGS =
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+LIBFLAGS = -rcuv
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+
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#################################################################
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## Should not be Necessary to Change Things Below this Point ##
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#################################################################
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@@ -529,11 +543,13 @@
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+##
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## Machine: Generic Linux
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## CPU Type: Intel x86 Compatible
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## Oper Sys: Fedora Core
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@@ -102,12 +116,12 @@
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## Compiler: Intel Fortran for Mac 11
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##
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||||
|
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-F77 = /opt/intel/Compiler/11.1/058/bin/intel64/ifort
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-LIBS =
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-F77FLAGS = -c -axSSSE3 -vec-report0
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-OPTFLAGS = -O3 -no-ipo -no-prec-div
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-LIBFLAGS = -crusv
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-LINKFLAGS = -static-intel -mmacosx-version-min=10.4
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+#F77 = /opt/intel/Compiler/11.1/058/bin/intel64/ifort
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+#LIBS =
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+#F77FLAGS = -c -axSSSE3 -vec-report0
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+#OPTFLAGS = -O3 -no-ipo -no-prec-div
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+#LIBFLAGS = -crusv
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+#LINKFLAGS = -static-intel -mmacosx-version-min=10.4
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|
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##
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## Machine: Macintosh (PPC)
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@@ -584,6 +598,8 @@
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xyzpdb.x \
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xyzsybyl.x
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@ -54,6 +73,10 @@
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.f.o:
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${F77} ${F77FLAGS} ${OPTFLAGS} $*.f
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@@ -596,8 +612,8 @@
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server.o:
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${F77} ${F77FLAGS} ${OPTFLAGS} server.f
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-%.x: %.o libtinker.a
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- ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}
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+.o.x: libtinker.a
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@ -61,7 +84,7 @@
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all: ${EXEFILES}
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@@ -544,59 +560,59 @@
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@@ -608,63 +624,63 @@
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cat *.i *.f > tinker.txt
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rename:
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@ -91,6 +114,8 @@
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- mv path.x $(BINDIR)/path
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- mv pdbxyz.x $(BINDIR)/pdbxyz
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- mv polarize.x $(BINDIR)/polarize
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- mv poledit.x $(BINDIR)/poledit
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- mv potential.x $(BINDIR)/potential
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- mv prmedit.x $(BINDIR)/prmedit
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- mv protein.x $(BINDIR)/protein
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- mv pss.x $(BINDIR)/pss
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@ -106,10 +131,12 @@
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- mv sybylxyz.x $(BINDIR)/sybylxyz
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- mv testgrad.x $(BINDIR)/testgrad
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- mv testhess.x $(BINDIR)/testhess
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- mv testlight.x $(BINDIR)/testlight
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- mv testpair.x $(BINDIR)/testpair
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- mv testrot.x $(BINDIR)/testrot
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- mv timer.x $(BINDIR)/timer
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- mv timerot.x $(BINDIR)/timerot
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- mv valence.x $(BINDIR)/valence
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- mv vibbig.x $(BINDIR)/vibbig
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- mv vibrate.x $(BINDIR)/vibrate
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- mv vibrot.x $(BINDIR)/vibrot
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- mv xtalfit.x $(BINDIR)/xtalfit
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@ -144,6 +171,8 @@
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+ ${INSTALL_PROGRAM} path.x $(BINDIR)/path
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+ ${INSTALL_PROGRAM} pdbxyz.x $(BINDIR)/pdbxyz
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+ ${INSTALL_PROGRAM} polarize.x $(BINDIR)/polarize
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+ ${INSTALL_PROGRAM} poledit.x $(BINDIR)/poledit
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+ ${INSTALL_PROGRAM} potential.x $(BINDIR)/potential
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+ ${INSTALL_PROGRAM} prmedit.x $(BINDIR)/prmedit
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+ ${INSTALL_PROGRAM} protein.x $(BINDIR)/protein
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+ ${INSTALL_PROGRAM} pss.x $(BINDIR)/pss
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@ -159,10 +188,12 @@
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+ ${INSTALL_PROGRAM} sybylxyz.x $(BINDIR)/sybylxyz
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+ ${INSTALL_PROGRAM} testgrad.x $(BINDIR)/testgrad
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+ ${INSTALL_PROGRAM} testhess.x $(BINDIR)/testhess
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+ ${INSTALL_PROGRAM} testlight.x $(BINDIR)/testlight
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+ ${INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair
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+ ${INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot
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+ ${INSTALL_PROGRAM} timer.x $(BINDIR)/timer
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+ ${INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot
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+ ${INSTALL_PROGRAM} valence.x $(BINDIR)/valence
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+ ${INSTALL_PROGRAM} vibbig.x $(BINDIR)/vibbig
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+ ${INSTALL_PROGRAM} vibrate.x $(BINDIR)/vibrate
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+ ${INSTALL_PROGRAM} vibrot.x $(BINDIR)/vibrot
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+ ${INSTALL_PROGRAM} xtalfit.x $(BINDIR)/xtalfit
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||||
|
@ -1,7 +1,7 @@
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||||
--- ../bench/bench5.run.orig Tue Jul 24 14:02:20 2001
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+++ ../bench/bench5.run Wed Sep 5 14:03:07 2001
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--- ../bench/bench5.run.orig 2010-08-25 00:58:15.000000000 +0400
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||||
+++ ../bench/bench5.run 2011-01-26 23:35:18.000000000 +0300
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@@ -1,3 +1,3 @@
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cp bench5.dyn0 bench5.dyn
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-time ../bin/dynamic bench5 100 1.0 10.0 2 298.0
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+time dynamic bench5 100 1.0 10.0 2 298.0
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-time ../bin/dynamic bench5 1000 1.0 10.0 2 298.0
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+time dynamic bench5 1000 1.0 10.0 2 298.0
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rm bench5.dyn
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|
@ -1,21 +0,0 @@
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||||
#!/bin/sh
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||||
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||||
# Determine if X is running
|
||||
if [ -z $DISPLAY ]; then
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echo You must be running X for this.
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else
|
||||
# Try to determine the color depth of the X server
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||||
|
||||
DEPTH=`xwininfo -root | grep Depth | awk '{print $2}'`
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||||
|
||||
if [ $DEPTH = 24 -o $DEPTH = 32 ]; then
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||||
PROGRAM=tview-32
|
||||
elif [ $DEPTH = 16 ]; then
|
||||
PROGRAM=tview-16
|
||||
elif [ $DEPTH = 8 ]; then
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||||
PROGRAM=tview-8
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||||
else
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||||
echo Can not determine color depth of Display $DISPLAY
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||||
fi
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||||
exec $PROGRAM $@
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||||
fi
|
@ -24,6 +24,8 @@ bin/optrigid
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||||
bin/path
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bin/pdbxyz
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||||
bin/polarize
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||||
bin/poledit
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||||
bin/potential
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||||
bin/prmedit
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||||
bin/protein
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||||
bin/pss
|
||||
@ -39,14 +41,12 @@ bin/superpose
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||||
bin/sybylxyz
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||||
bin/testgrad
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||||
bin/testhess
|
||||
bin/testlight
|
||||
bin/testpair
|
||||
bin/testrot
|
||||
bin/timer
|
||||
bin/timerot
|
||||
%%WITH_VIEWER%%bin/tview
|
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%%WITH_VIEWER%%bin/tview-8
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%%WITH_VIEWER%%bin/tview-16
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||||
%%WITH_VIEWER%%bin/tview-32
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bin/valence
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bin/vibbig
|
||||
bin/vibrate
|
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bin/vibrot
|
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bin/xtalfit
|
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@ -55,7 +55,7 @@ bin/xyzedit
|
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bin/xyzint
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||||
bin/xyzpdb
|
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bin/xyzsybyl
|
||||
%%PORTDOCS%%%%DOCSDIR%%/README
|
||||
%%PORTDOCS%%%%DOCSDIR%%/0README
|
||||
%%PORTDOCS%%%%DOCSDIR%%/ffe-guide.pdf
|
||||
%%PORTDOCS%%%%DOCSDIR%%/guide.pdf
|
||||
%%PORTDOCS%%%%DOCSDIR%%/guide.txt
|
||||
@ -71,54 +71,366 @@ bin/xyzsybyl
|
||||
%%PORTDOCS%%%%DOCSDIR%%/release-4.2
|
||||
%%PORTDOCS%%%%DOCSDIR%%/summary.pdf
|
||||
%%PORTDOCS%%%%DOCSDIR%%/summary.txt
|
||||
%%PORTDOCS%%share/examples/tinker/README
|
||||
%%PORTDOCS%%share/examples/tinker/anion.dat
|
||||
%%PORTDOCS%%share/examples/tinker/anion.dyn0
|
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%%PORTDOCS%%share/examples/tinker/anion.key
|
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%%PORTDOCS%%share/examples/tinker/anion.log
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%%PORTDOCS%%share/examples/tinker/anion.run
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%%PORTDOCS%%share/examples/tinker/anion.xyz
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||||
%%PORTDOCS%%share/examples/tinker/argon.1st
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%%PORTDOCS%%share/examples/tinker/argon.key
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%%PORTDOCS%%share/examples/tinker/argon.log
|
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%%PORTDOCS%%share/examples/tinker/argon.run
|
||||
%%PORTDOCS%%share/examples/tinker/clean.make
|
||||
%%PORTDOCS%%share/examples/tinker/cluster.dat
|
||||
%%PORTDOCS%%share/examples/tinker/cluster.key
|
||||
%%PORTDOCS%%share/examples/tinker/cluster.log
|
||||
%%PORTDOCS%%share/examples/tinker/cluster.run
|
||||
%%PORTDOCS%%share/examples/tinker/cluster.xyz
|
||||
%%PORTDOCS%%share/examples/tinker/crambin.key
|
||||
%%PORTDOCS%%share/examples/tinker/crambin.log
|
||||
%%PORTDOCS%%share/examples/tinker/crambin.pdb
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||||
%%PORTDOCS%%share/examples/tinker/crambin.run
|
||||
%%PORTDOCS%%share/examples/tinker/cyclohex.boat
|
||||
%%PORTDOCS%%share/examples/tinker/cyclohex.chair
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||||
%%PORTDOCS%%share/examples/tinker/cyclohex.key
|
||||
%%PORTDOCS%%share/examples/tinker/cyclohex.log
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||||
%%PORTDOCS%%share/examples/tinker/cyclohex.run
|
||||
%%PORTDOCS%%share/examples/tinker/dialanine.key
|
||||
%%PORTDOCS%%share/examples/tinker/dialanine.log
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||||
%%PORTDOCS%%share/examples/tinker/dialanine.run
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||||
%%PORTDOCS%%share/examples/tinker/dialanine.xyz
|
||||
%%PORTDOCS%%share/examples/tinker/enkephalin.dat
|
||||
%%PORTDOCS%%share/examples/tinker/enkephalin.key
|
||||
%%PORTDOCS%%share/examples/tinker/enkephalin.log
|
||||
%%PORTDOCS%%share/examples/tinker/enkephalin.run
|
||||
%%PORTDOCS%%share/examples/tinker/formamide.cell
|
||||
%%PORTDOCS%%share/examples/tinker/formamide.dat
|
||||
%%PORTDOCS%%share/examples/tinker/formamide.key
|
||||
%%PORTDOCS%%share/examples/tinker/formamide.log
|
||||
%%PORTDOCS%%share/examples/tinker/formamide.run
|
||||
%%PORTDOCS%%share/examples/tinker/helix.1st
|
||||
%%PORTDOCS%%share/examples/tinker/helix.key
|
||||
%%PORTDOCS%%share/examples/tinker/helix.log
|
||||
%%PORTDOCS%%share/examples/tinker/helix.run
|
||||
%%PORTDOCS%%share/examples/tinker/salt.cell
|
||||
%%PORTDOCS%%share/examples/tinker/salt.key
|
||||
%%PORTDOCS%%share/examples/tinker/salt.log
|
||||
%%PORTDOCS%%share/examples/tinker/salt.run
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/README
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/0README
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/alatet.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/alatet.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/alatet.seq
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/alatet.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/alkane.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/alkane.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/ammonia.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/ammonia.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/amoeba.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/amoeba.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/arach.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/arach.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/arach.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/azulene.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/azulene.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/azulene.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bdna.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bdna.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bdna.make
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bdna.pdb
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bdna.seq
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bdna.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bearing.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bearing.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bearing2.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzamidine.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzamidine.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzbox.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzbox.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzene.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzene.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/benzene.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl2.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl2.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl3.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bowl3.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bucky.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bucky.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/bucky.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/butane.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/butane.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/butane.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/butane2.int
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/melittin.xyz
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/octane2.xyz
|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/palmitate.int
|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pentane.key
|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/peptide.int
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/peptide.xyz
|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/phenanth.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/photo.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/photo.seq
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/photo.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pol3.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pol3.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/polyala.key
|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/propane.key
|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/propellane.int
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pyridine.int
|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pyrrole.int
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pyrrole.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/pyrrole.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/retinoic.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/retinoic.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/skunk.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/skunk.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/spc.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/spc.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/sterol.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/sterol.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/styrene.int
|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/styrene.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/terphenyl.key
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/terphenyl.xyz
|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/tfe.key
|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/thiadiene.int
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%EXAMPLESDIR%%/urea.frac
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench1.xyz
|
||||
@ -138,6 +450,14 @@ bin/xyzsybyl
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench6.run
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench6.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench7.key
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench7.log
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench7.run
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/bench7.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-2.3
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-2.4
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-2.9
|
||||
@ -151,17 +471,24 @@ bin/xyzsybyl
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-4.0
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-4.1
|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-4.3
|
||||
%%PORTDOCS%%%%DATADIR%%/bench/results-5.0
|
||||
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|
||||
%%DATADIR%%/params/0README
|
||||
%%DATADIR%%/params/amber02.prm
|
||||
%%DATADIR%%/params/amber94.prm
|
||||
%%DATADIR%%/params/amber96.prm
|
||||
%%DATADIR%%/params/amber98.prm
|
||||
%%DATADIR%%/params/amber99.prm
|
||||
%%DATADIR%%/params/amoeba.prm
|
||||
%%DATADIR%%/params/amoebapro.prm
|
||||
%%DATADIR%%/params/amber99sb.prm
|
||||
%%DATADIR%%/params/amoeba04.prm
|
||||
%%DATADIR%%/params/amoeba09.prm
|
||||
%%DATADIR%%/params/amoebabio09.prm
|
||||
%%DATADIR%%/params/amoebapro04.prm
|
||||
%%DATADIR%%/params/charmm19.prm
|
||||
%%DATADIR%%/params/charmm27.prm
|
||||
%%DATADIR%%/params/charmm22.prm
|
||||
%%DATADIR%%/params/charmm22cmap.prm
|
||||
%%DATADIR%%/params/dang.prm
|
||||
%%DATADIR%%/params/dudek.prm
|
||||
%%DATADIR%%/params/hoch.prm
|
||||
%%DATADIR%%/params/mm2.prm
|
||||
%%DATADIR%%/params/mm3.prm
|
||||
@ -169,303 +496,80 @@ bin/xyzsybyl
|
||||
%%DATADIR%%/params/oplsaa.prm
|
||||
%%DATADIR%%/params/oplsaal.prm
|
||||
%%DATADIR%%/params/oplsua.prm
|
||||
%%DATADIR%%/params/smooth.prm
|
||||
%%DATADIR%%/params/smoothaa.prm
|
||||
%%DATADIR%%/params/smoothua.prm
|
||||
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|
||||
%%DATADIR%%/params/water.prm
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/test/bdna.make
|
||||
%%PORTDOCS%%%%DATADIR%%/test/bdna.seq
|
||||
%%PORTDOCS%%%%DATADIR%%/test/bdna.xyz
|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/test/bearing.xyz
|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/test/bearing2.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/benzene.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/benzene.key
|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/test/bowl.int
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/test/butanes.dyn
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
%%PORTDOCS%%%%DATADIR%%/test/skunk.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/skunk.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/spc.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/spc.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/sterol.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/sterol.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/styrene.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/styrene.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/styrene.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/terphenyl.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/terphenyl.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tfe.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tfe.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thiadiene.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thiadiene.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thiadiene.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thiophene.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thiophene.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thiophene.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thr.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thr.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/thr.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip3f.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip3f.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip3p.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip3p.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip4f.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip4f.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip4p.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip4p.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip5p.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tip5p.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/trpcage.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/trpcage.pdb
|
||||
%%PORTDOCS%%%%DATADIR%%/test/trpcage.seq
|
||||
%%PORTDOCS%%%%DATADIR%%/test/trpcage.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/water.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/helix.log
|
||||
%%PORTDOCS%%%%DATADIR%%/test/helix.run
|
||||
%%PORTDOCS%%%%DATADIR%%/test/salt.cell
|
||||
%%PORTDOCS%%%%DATADIR%%/test/salt.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/salt.log
|
||||
%%PORTDOCS%%%%DATADIR%%/test/salt.run
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tetraala.dat
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tetraala.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tetraala.log
|
||||
%%PORTDOCS%%%%DATADIR%%/test/tetraala.run
|
||||
%%PORTDOCS%%%%DATADIR%%/test/water.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/water.log
|
||||
%%PORTDOCS%%%%DATADIR%%/test/water.pot
|
||||
%%PORTDOCS%%%%DATADIR%%/test/water.run
|
||||
%%PORTDOCS%%%%DATADIR%%/test/water.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterbig.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterbig.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterbox.dyn
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterbox.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterbox.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterdot.dyn
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterdot.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterdot.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterhuge.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/waterhuge.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/watersmall.dyn
|
||||
%%PORTDOCS%%%%DATADIR%%/test/watersmall.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/watersmall.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/watertiny.dyn
|
||||
%%PORTDOCS%%%%DATADIR%%/test/watertiny.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/watertiny.xyz
|
||||
%%PORTDOCS%%%%DATADIR%%/test/white.int
|
||||
%%PORTDOCS%%%%DATADIR%%/test/white.key
|
||||
%%PORTDOCS%%%%DATADIR%%/test/white.xyz
|
||||
%%DATADIR%%/tinker.txt
|
||||
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
||||
%%PORTDOCS%%@dirrm share/examples/tinker
|
||||
%%PORTDOCS%%@dirrm %%DATADIR%%/bench
|
||||
@dirrm %%DATADIR%%/params
|
||||
%%WITH_VIEWER%%@dirrm %%DATADIR%%/rasmol
|
||||
%%PORTDOCS%%@dirrm %%DATADIR%%/test
|
||||
@dirrm %%DATADIR%%/params
|
||||
%%PORTDOCS%%@dirrm %%DATADIR%%/bench
|
||||
@dirrm %%DATADIR%%
|
||||
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
|
||||
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
||||
|
@ -1,47 +0,0 @@
|
||||
#!/bin/sh
|
||||
|
||||
# This builds the molecular viewer for tinker files. It is a modified
|
||||
# version of rasmol. One of the problems with rasmol is that is only
|
||||
# works at one color depth. This script will build three viewers at
|
||||
# different color depths, 8-bit, 16-bit, and 32-bit. The binaries are
|
||||
# called tview-8, tview-16, and tview-32 respectively.
|
||||
|
||||
cd ${WRKSRC}/../rasmol
|
||||
|
||||
cp Imakefile Imakefile.orig
|
||||
|
||||
sed s@/user/ponder@${PREFIX}/share@ Imakefile > Imakefile.temp
|
||||
|
||||
sed s@'ComplexProgramTarget(rasmol)'@'ComplexProgramTarget(tview-32)'@ \
|
||||
Imakefile.temp > Imakefile
|
||||
|
||||
xmkmf -a
|
||||
|
||||
make clean && make
|
||||
|
||||
sed -e s@'DEPTHDEF = -DTHIRTYTWOBIT'@'# DEPTHDEF = -DTHIRTYTWOBIT'@ \
|
||||
-e s@'# DEPTHDEF = -DSIXTEENBIT'@'DEPTHDEF = -DSIXTEENBIT'@ \
|
||||
-e s@'ComplexProgramTarget(rasmol)'@'ComplexProgramTarget(tview-16)'@ \
|
||||
Imakefile.temp > Imakefile
|
||||
|
||||
xmkmf -a
|
||||
|
||||
make clean && make
|
||||
|
||||
sed -e s@'DEPTHDEF = -DTHIRTYTWOBIT'@'# DEPTHDEF = -DTHIRTYTWOBIT'@ \
|
||||
-e s@'# DEPTHDEF = -DEIGHTBIT'@'DEPTHDEF = -DEIGHTBIT'@ \
|
||||
-e s@'ComplexProgramTarget(rasmol)'@'ComplexProgramTarget(tview-8)'@ \
|
||||
Imakefile.temp > Imakefile
|
||||
|
||||
xmkmf -a
|
||||
|
||||
make clean && make
|
||||
|
||||
# Restore Imakefile to original state so that rerunning this script does
|
||||
# the right thing.
|
||||
rm Imakefile.temp
|
||||
mv Imakefile.orig Imakefile
|
||||
xmkmf -a
|
||||
make clean
|
||||
|
||||
exit 0
|
Loading…
Reference in New Issue
Block a user