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biology/vt: Fix build with htslib 1.11

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Reported by:    fallout
This commit is contained in:
Jason W. Bacon 2020-11-09 00:35:58 +00:00
parent 98488e5fad
commit 899ed588d9
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=554660
2 changed files with 13 additions and 2 deletions
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4
biology/vt/Makefile
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@ -2,7 +2,7 @@
PORTNAME= vt
DISTVERSION= 0.57721
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -10,7 +10,7 @@ COMMENT= Discovers short variants from Next Generation Sequencing data
LICENSE= MIT
LIB_DEPENDS= libhts.so.3:biology/htslib \
LIB_DEPENDS= libhts.so:biology/htslib \
libsvm.so:science/libsvm \
libdeflate.so:archivers/libdeflate \
libcurl.so:ftp/curl

11
biology/vt/files/patch-hts__utils.h Normal file
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@ -0,0 +1,11 @@
--- hts_utils.h.orig 2020-11-08 22:09:58 UTC
+++ hts_utils.h
@@ -47,7 +47,7 @@ typedef struct {
KHASH_MAP_INIT_STR(s, faidx1_t)
-struct __faidx_t {
+struct faidx_t {
BGZF *bgzf;
int n, m;
char **name;