biology/vt: Fix build with htslib 1.11
Reported by: fallout
This commit is contained in:
parent
98488e5fad
commit
899ed588d9
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=554660
@ -2,7 +2,7 @@
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PORTNAME= vt
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DISTVERSION= 0.57721
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PORTREVISION= 1
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PORTREVISION= 2
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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@ -10,7 +10,7 @@ COMMENT= Discovers short variants from Next Generation Sequencing data
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LICENSE= MIT
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LIB_DEPENDS= libhts.so.3:biology/htslib \
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LIB_DEPENDS= libhts.so:biology/htslib \
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libsvm.so:science/libsvm \
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libdeflate.so:archivers/libdeflate \
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libcurl.so:ftp/curl
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11
biology/vt/files/patch-hts__utils.h
Normal file
11
biology/vt/files/patch-hts__utils.h
Normal file
@ -0,0 +1,11 @@
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--- hts_utils.h.orig 2020-11-08 22:09:58 UTC
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+++ hts_utils.h
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@@ -47,7 +47,7 @@ typedef struct {
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KHASH_MAP_INIT_STR(s, faidx1_t)
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-struct __faidx_t {
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+struct faidx_t {
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BGZF *bgzf;
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int n, m;
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char **name;
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