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Add vmd, a molecular visualization program for displaying, animating, and

Browse Source 
analyzing large biomolecular systems using 3-D graphics and built-in scripting.

PR:		ports/70509
Submitted by:	Stephen Montgomery-Smith <stephen@math.missouri.edu>
This commit is contained in:
Pav Lucistnik 2004-08-21 16:34:57 +00:00
parent 142fd293c7
commit 853b60d0ee
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=116960
8 changed files with 534 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
science/Makefile
View File

@ -43,6 +43,7 @@
SUBDIR += ruby-dcl-gtk
SUBDIR += ruby-gphys
SUBDIR += vis5d+
SUBDIR += vmd
SUBDIR += xloops-ginac
SUBDIR += xmakemol

64
science/vmd/Makefile Normal file
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@ -0,0 +1,64 @@
# New ports collection makefile for: vmd
# Date created: 12 August 2004
# Whom: Stephen Montgomery-Smith <stephen@math.missouri.edu>
#
# $FreeBSD$
#
PORTNAME= vmd
PORTVERSION= 1.8.2
CATEGORIES= science graphics python tcl84 tk84
MASTER_SITES= #
DISTFILES= ${PORTNAME}-${PORTVERSION}.src.tar.gz
MAINTAINER= stephen@math.missouri.edu
COMMENT= A molecular visualization program
BUILD_DEPENDS= ${PYNUMERIC}
LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \
tk84:${PORTSDIR}/x11-toolkits/tk84 \
fltk:${PORTSDIR}/x11-toolkits/fltk
RUN_DEPENDS= ${PYNUMERIC}
USE_PERL5_BUILD= yes
USE_GMAKE= yes
USE_GL= yes
USE_PYTHON= yes
USE_REINPLACE= yes
# I.A.N.A.L. so this may be overly restrictive.
NO_PACKAGE= "License has restrictions"
NO_CDROM= "License has restrictions"
RESTRICTED= "License has restrictions"
.include <bsd.port.pre.mk>
# Check for VMD sources
.if !exists(${DISTDIR}/${DISTFILES}) # && !defined(PACKAGE_BUILDING)
ECHO_MSG= /usr/bin/printf
IGNORE= :\n\
Because of licensing restrictions, you must fetch the source distribution\n\
manually. Please access\n\
http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\n\
with a web browser. You will be required to log in and register,\n\
but you can create an account on this page. After registration and\n\
accepting the University of Illinois agreement, download the source file,\n\
${DISTFILES}. Please place this file in ${DISTDIR}.\n
.endif
post-patch:
${REINPLACE_CMD} "s/-lpthread/${PTHREAD_LIBS}/" ${WRKSRC}/configure
${REINPLACE_CMD} "s/-ltk8.4/-ltk84/" ${WRKSRC}/configure
${REINPLACE_CMD} "s/-ltcl8.4/-ltcl84/" ${WRKSRC}/configure
${REINPLACE_CMD} "s%\$$python_dir/lib_\$$config_arch%${PREFIX}%" ${WRKSRC}/configure
${REINPLACE_CMD} "s/python2.2/${PYTHON_VERSION}/" ${WRKSRC}/configure
do-build:
cd ${WRKDIR}/plugins && ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${GMAKE} FREEBSD distrib
cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.4 TK_INCLUDE_DIR=${PREFIX}/include/tk8.4 ${GMAKE} freebsd.opengl
cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${GMAKE} all
do-install:
cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${GMAKE} install
.include <bsd.port.post.mk>

2
science/vmd/distinfo Normal file
View File

@ -0,0 +1,2 @@
MD5 (vmd-1.8.2.src.tar.gz) = 8ad9cb90d954740f3b54be585526698d
SIZE (vmd-1.8.2.src.tar.gz) = 7192878

11
science/vmd/files/patch-AtomParser.C Normal file
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@ -0,0 +1,11 @@
--- src/AtomParser.C-xxx Fri Dec 5 13:21:53 2003
+++ src/AtomParser.C Thu Aug 12 00:24:00 2004
@@ -109,7 +109,7 @@
#define YYCONST
#endif
-#if !defined(_MSC_VER) && !defined(ARCH_MACOSX)
+#if !defined(_MSC_VER) && !defined(ARCH_MACOSX) && !defined(ARCH_FREEBSD)
#include <values.h>
#endif

16
science/vmd/files/patch-Makefile Normal file
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@ -0,0 +1,16 @@
--- Makefile-ooo Fri Dec 5 13:20:58 2003
+++ Makefile Thu Aug 12 00:12:06 2004
@@ -52,11 +52,11 @@
## FreeBSD builds
freebsd.mesa:
- ./configure FREEBSD MESA FLTK TK TCL IMD VRPN PYTHON PTHREADS LIBTACHYON NUMPY SILENT
+ ./configure FREEBSD MESA FLTK TK TCL IMD PYTHON PTHREADS NUMPY SILENT
# FreeBSD doesn't have hardware good accelleration support
freebsd.opengl:
- ./configure FREEBSD OPENGL FLTK TK IMD VRPN SILENT SPACEBALL TCL PTHREADS ACTC LIBTACHYON PYTHON NUMPY
+ ./configure FREEBSD OPENGL FLTK TK IMD SILENT TCL PTHREADS PYTHON NUMPY

20
science/vmd/files/patch-configure Normal file
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@ -0,0 +1,20 @@
--- configure-xxx Fri Dec 5 13:20:58 2003
+++ configure Thu Aug 12 00:22:30 2004
@@ -1175,7 +1175,7 @@
# XFree 4.0 Direct Rendering Interface and GLX
$opengl_dir = "/usr/X11R6";
$opengl_include = "-I$opengl_dir/include";
- $opengl_library = "-L$opengl_dir/lib";
+ $opengl_library = "-L$opengl_dir/lib -L/usr/local/lib";
$opengl_libs = "-lGL -lGLU";
$arch_lex = "flex";
@@ -1209,7 +1209,7 @@
# this is to make tcl happy,
# also needed for plugins
- $system_libs .= " -ldl";
+ # $system_libs .= " -ldl";
if ($config_python) {
# this is to make python happy

4
science/vmd/pkg-descr Normal file
View File

@ -0,0 +1,4 @@
VMD is a molecular visualization program for displaying, animating, and
analyzing large biomolecular systems using 3-D graphics and built-in scripting.
WWW: http://www.ks.uiuc.edu/Research/vmd/

416
science/vmd/pkg-plist Normal file
View File

@ -0,0 +1,416 @@
bin/vmd
lib/vmd/doc/ug.pdf
lib/vmd/Announcement
lib/vmd/README
lib/vmd/LICENSE
lib/vmd/vmd_FREEBSD
lib/vmd/scripts/CVS/Root
lib/vmd/scripts/CVS/Repository
lib/vmd/scripts/CVS/Entries
lib/vmd/scripts/vmd/CVS/Root
lib/vmd/scripts/vmd/CVS/Repository
lib/vmd/scripts/vmd/CVS/Entries
lib/vmd/scripts/vmd/README.chemical2vmd
lib/vmd/scripts/vmd/save_state.tcl
lib/vmd/scripts/vmd/atomselect.tcl
lib/vmd/scripts/vmd/tclIndex
lib/vmd/scripts/vmd/chemical2vmd
lib/vmd/scripts/vmd/draw.tcl
lib/vmd/scripts/vmd/vmdinit.tcl
lib/vmd/scripts/vmd/vectors.tcl
lib/vmd/scripts/vmd/graphlabels.tcl
lib/vmd/scripts/vmd/hotkeys.tcl
lib/vmd/scripts/vmd/openURL.tcl
lib/vmd/scripts/vmd/atomselmacros.tcl
lib/vmd/scripts/vmd/biocore.tcl
lib/vmd/scripts/vmd/logfile.tcl
lib/vmd/scripts/vmd/www.tcl
lib/vmd/scripts/README
lib/vmd/scripts/tcl8.4/http2.4/http.tcl
lib/vmd/scripts/tcl8.4/http2.4/pkgIndex.tcl
lib/vmd/scripts/tcl8.4/http1.0/http.tcl
lib/vmd/scripts/tcl8.4/http1.0/pkgIndex.tcl
lib/vmd/scripts/tcl8.4/opt0.4/optparse.tcl
lib/vmd/scripts/tcl8.4/opt0.4/pkgIndex.tcl
lib/vmd/scripts/tcl8.4/encoding/ascii.enc
lib/vmd/scripts/tcl8.4/encoding/big5.enc
lib/vmd/scripts/tcl8.4/encoding/cp1250.enc
lib/vmd/scripts/tcl8.4/encoding/cp1251.enc
lib/vmd/scripts/tcl8.4/encoding/cp1252.enc
lib/vmd/scripts/tcl8.4/encoding/cp1253.enc
lib/vmd/scripts/tcl8.4/encoding/cp1254.enc
lib/vmd/scripts/tcl8.4/encoding/cp1255.enc
lib/vmd/scripts/tcl8.4/encoding/cp1256.enc
lib/vmd/scripts/tcl8.4/encoding/cp1257.enc
lib/vmd/scripts/tcl8.4/encoding/cp1258.enc
lib/vmd/scripts/tcl8.4/encoding/cp437.enc
lib/vmd/scripts/tcl8.4/encoding/cp737.enc
lib/vmd/scripts/tcl8.4/encoding/cp775.enc
lib/vmd/scripts/tcl8.4/encoding/cp850.enc
lib/vmd/scripts/tcl8.4/encoding/cp852.enc
lib/vmd/scripts/tcl8.4/encoding/cp855.enc
lib/vmd/scripts/tcl8.4/encoding/cp857.enc
lib/vmd/scripts/tcl8.4/encoding/cp860.enc
lib/vmd/scripts/tcl8.4/encoding/cp861.enc
lib/vmd/scripts/tcl8.4/encoding/cp862.enc
lib/vmd/scripts/tcl8.4/encoding/cp863.enc
lib/vmd/scripts/tcl8.4/encoding/cp864.enc
lib/vmd/scripts/tcl8.4/encoding/cp865.enc
lib/vmd/scripts/tcl8.4/encoding/cp866.enc
lib/vmd/scripts/tcl8.4/encoding/cp869.enc
lib/vmd/scripts/tcl8.4/encoding/cp874.enc
lib/vmd/scripts/tcl8.4/encoding/cp932.enc
lib/vmd/scripts/tcl8.4/encoding/cp936.enc
lib/vmd/scripts/tcl8.4/encoding/cp949.enc
lib/vmd/scripts/tcl8.4/encoding/cp950.enc
lib/vmd/scripts/tcl8.4/encoding/dingbats.enc
lib/vmd/scripts/tcl8.4/encoding/ebcdic.enc
lib/vmd/scripts/tcl8.4/encoding/euc-cn.enc
lib/vmd/scripts/tcl8.4/encoding/euc-jp.enc
lib/vmd/scripts/tcl8.4/encoding/euc-kr.enc
lib/vmd/scripts/tcl8.4/encoding/gb12345.enc
lib/vmd/scripts/tcl8.4/encoding/gb1988.enc
lib/vmd/scripts/tcl8.4/encoding/gb2312.enc
lib/vmd/scripts/tcl8.4/encoding/iso2022-jp.enc
lib/vmd/scripts/tcl8.4/encoding/iso2022-kr.enc
lib/vmd/scripts/tcl8.4/encoding/iso2022.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-1.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-10.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-13.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-14.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-15.enc
lib/vmd/scripts/tcl8.4/encoding/jis0201.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-16.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-2.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-3.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-4.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-5.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-6.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-7.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-8.enc
lib/vmd/scripts/tcl8.4/encoding/iso8859-9.enc
lib/vmd/scripts/tcl8.4/encoding/jis0208.enc
lib/vmd/scripts/tcl8.4/encoding/jis0212.enc
lib/vmd/scripts/tcl8.4/encoding/koi8-r.enc
lib/vmd/scripts/tcl8.4/encoding/koi8-u.enc
lib/vmd/scripts/tcl8.4/encoding/ksc5601.enc
lib/vmd/scripts/tcl8.4/encoding/macCentEuro.enc
lib/vmd/scripts/tcl8.4/encoding/macCroatian.enc
lib/vmd/scripts/tcl8.4/encoding/macCyrillic.enc
lib/vmd/scripts/tcl8.4/encoding/macDingbats.enc
lib/vmd/scripts/tcl8.4/encoding/macGreek.enc
lib/vmd/scripts/tcl8.4/encoding/macIceland.enc
lib/vmd/scripts/tcl8.4/encoding/macJapan.enc
lib/vmd/scripts/tcl8.4/encoding/macRoman.enc
lib/vmd/scripts/tcl8.4/encoding/macRomania.enc
lib/vmd/scripts/tcl8.4/encoding/macThai.enc
lib/vmd/scripts/tcl8.4/encoding/macTurkish.enc
lib/vmd/scripts/tcl8.4/encoding/macUkraine.enc
lib/vmd/scripts/tcl8.4/encoding/shiftjis.enc
lib/vmd/scripts/tcl8.4/encoding/symbol.enc
lib/vmd/scripts/tcl8.4/encoding/tis-620.enc
lib/vmd/scripts/tcl8.4/msgcat1.3/msgcat.tcl
lib/vmd/scripts/tcl8.4/msgcat1.3/pkgIndex.tcl
lib/vmd/scripts/tcl8.4/tcltest2.2/pkgIndex.tcl
lib/vmd/scripts/tcl8.4/tcltest2.2/tcltest.tcl
lib/vmd/scripts/tcl8.4/auto.tcl
lib/vmd/scripts/tcl8.4/history.tcl
lib/vmd/scripts/tcl8.4/init.tcl
lib/vmd/scripts/tcl8.4/ldAout.tcl
lib/vmd/scripts/tcl8.4/package.tcl
lib/vmd/scripts/tcl8.4/parray.tcl
lib/vmd/scripts/tcl8.4/safe.tcl
lib/vmd/scripts/tcl8.4/word.tcl
lib/vmd/scripts/tcl8.4/tclIndex
lib/vmd/scripts/tcl8.4/tclAppInit.c
lib/vmd/scripts/tcl8.4/ldAix
lib/vmd/scripts/tk8.4/images/README
lib/vmd/scripts/tk8.4/images/logo.eps
lib/vmd/scripts/tk8.4/images/logo100.gif
lib/vmd/scripts/tk8.4/images/logo64.gif
lib/vmd/scripts/tk8.4/images/logoLarge.gif
lib/vmd/scripts/tk8.4/images/logoMed.gif
lib/vmd/scripts/tk8.4/images/pwrdLogo.eps
lib/vmd/scripts/tk8.4/images/pwrdLogo100.gif
lib/vmd/scripts/tk8.4/images/pwrdLogo150.gif
lib/vmd/scripts/tk8.4/images/pwrdLogo175.gif
lib/vmd/scripts/tk8.4/images/pwrdLogo200.gif
lib/vmd/scripts/tk8.4/images/pwrdLogo75.gif
lib/vmd/scripts/tk8.4/images/tai-ku.gif
lib/vmd/scripts/tk8.4/msgs/cs.msg
lib/vmd/scripts/tk8.4/msgs/de.msg
lib/vmd/scripts/tk8.4/msgs/el.msg
lib/vmd/scripts/tk8.4/msgs/en.msg
lib/vmd/scripts/tk8.4/msgs/en_gb.msg
lib/vmd/scripts/tk8.4/msgs/es.msg
lib/vmd/scripts/tk8.4/msgs/fr.msg
lib/vmd/scripts/tk8.4/msgs/it.msg
lib/vmd/scripts/tk8.4/msgs/nl.msg
lib/vmd/scripts/tk8.4/msgs/ru.msg
lib/vmd/scripts/tk8.4/bgerror.tcl
lib/vmd/scripts/tk8.4/button.tcl
lib/vmd/scripts/tk8.4/choosedir.tcl
lib/vmd/scripts/tk8.4/clrpick.tcl
lib/vmd/scripts/tk8.4/comdlg.tcl
lib/vmd/scripts/tk8.4/console.tcl
lib/vmd/scripts/tk8.4/dialog.tcl
lib/vmd/scripts/tk8.4/entry.tcl
lib/vmd/scripts/tk8.4/focus.tcl
lib/vmd/scripts/tk8.4/listbox.tcl
lib/vmd/scripts/tk8.4/menu.tcl
lib/vmd/scripts/tk8.4/mkpsenc.tcl
lib/vmd/scripts/tk8.4/msgbox.tcl
lib/vmd/scripts/tk8.4/obsolete.tcl
lib/vmd/scripts/tk8.4/optMenu.tcl
lib/vmd/scripts/tk8.4/palette.tcl
lib/vmd/scripts/tk8.4/panedwindow.tcl
lib/vmd/scripts/tk8.4/safetk.tcl
lib/vmd/scripts/tk8.4/scale.tcl
lib/vmd/scripts/tk8.4/scrlbar.tcl
lib/vmd/scripts/tk8.4/spinbox.tcl
lib/vmd/scripts/tk8.4/tearoff.tcl
lib/vmd/scripts/tk8.4/text.tcl
lib/vmd/scripts/tk8.4/tk.tcl
lib/vmd/scripts/tk8.4/tkfbox.tcl
lib/vmd/scripts/tk8.4/unsupported.tcl
lib/vmd/scripts/tk8.4/xmfbox.tcl
lib/vmd/scripts/tk8.4/prolog.ps
lib/vmd/scripts/tk8.4/tclIndex
lib/vmd/scripts/tk8.4/tkAppInit.c
lib/vmd/scripts/tk8.4/demos/images/earth.gif
lib/vmd/scripts/tk8.4/demos/images/earthris.gif
lib/vmd/scripts/tk8.4/demos/images/face.bmp
lib/vmd/scripts/tk8.4/demos/images/flagdown.bmp
lib/vmd/scripts/tk8.4/demos/images/flagup.bmp
lib/vmd/scripts/tk8.4/demos/images/gray25.bmp
lib/vmd/scripts/tk8.4/demos/images/letters.bmp
lib/vmd/scripts/tk8.4/demos/images/noletter.bmp
lib/vmd/scripts/tk8.4/demos/images/pattern.bmp
lib/vmd/scripts/tk8.4/demos/images/tcllogo.gif
lib/vmd/scripts/tk8.4/demos/images/teapot.ppm
lib/vmd/scripts/tk8.4/demos/README
lib/vmd/scripts/tk8.4/demos/arrow.tcl
lib/vmd/scripts/tk8.4/demos/bind.tcl
lib/vmd/scripts/tk8.4/demos/bitmap.tcl
lib/vmd/scripts/tk8.4/demos/browse
lib/vmd/scripts/tk8.4/demos/button.tcl
lib/vmd/scripts/tk8.4/demos/check.tcl
lib/vmd/scripts/tk8.4/demos/clrpick.tcl
lib/vmd/scripts/tk8.4/demos/colors.tcl
lib/vmd/scripts/tk8.4/demos/cscroll.tcl
lib/vmd/scripts/tk8.4/demos/ctext.tcl
lib/vmd/scripts/tk8.4/demos/dialog1.tcl
lib/vmd/scripts/tk8.4/demos/dialog2.tcl
lib/vmd/scripts/tk8.4/demos/entry1.tcl
lib/vmd/scripts/tk8.4/demos/entry2.tcl
lib/vmd/scripts/tk8.4/demos/entry3.tcl
lib/vmd/scripts/tk8.4/demos/filebox.tcl
lib/vmd/scripts/tk8.4/demos/floor.tcl
lib/vmd/scripts/tk8.4/demos/form.tcl
lib/vmd/scripts/tk8.4/demos/hello
lib/vmd/scripts/tk8.4/demos/hscale.tcl
lib/vmd/scripts/tk8.4/demos/icon.tcl
lib/vmd/scripts/tk8.4/demos/image1.tcl
lib/vmd/scripts/tk8.4/demos/image2.tcl
lib/vmd/scripts/tk8.4/demos/items.tcl
lib/vmd/scripts/tk8.4/demos/ixset
lib/vmd/scripts/tk8.4/demos/label.tcl
lib/vmd/scripts/tk8.4/demos/labelframe.tcl
lib/vmd/scripts/tk8.4/demos/license.terms
lib/vmd/scripts/tk8.4/demos/menu.tcl
lib/vmd/scripts/tk8.4/demos/menubu.tcl
lib/vmd/scripts/tk8.4/demos/msgbox.tcl
lib/vmd/scripts/tk8.4/demos/paned1.tcl
lib/vmd/scripts/tk8.4/demos/paned2.tcl
lib/vmd/scripts/tk8.4/demos/plot.tcl
lib/vmd/scripts/tk8.4/demos/puzzle.tcl
lib/vmd/scripts/tk8.4/demos/radio.tcl
lib/vmd/scripts/tk8.4/demos/rmt
lib/vmd/scripts/tk8.4/demos/rolodex
lib/vmd/scripts/tk8.4/demos/ruler.tcl
lib/vmd/scripts/tk8.4/demos/sayings.tcl
lib/vmd/scripts/tk8.4/demos/search.tcl
lib/vmd/scripts/tk8.4/demos/spin.tcl
lib/vmd/scripts/tk8.4/demos/square
lib/vmd/scripts/tk8.4/demos/states.tcl
lib/vmd/scripts/tk8.4/demos/style.tcl
lib/vmd/scripts/tk8.4/demos/tclIndex
lib/vmd/scripts/tk8.4/demos/tcolor
lib/vmd/scripts/tk8.4/demos/text.tcl
lib/vmd/scripts/tk8.4/demos/timer
lib/vmd/scripts/tk8.4/demos/twind.tcl
lib/vmd/scripts/tk8.4/demos/vscale.tcl
lib/vmd/scripts/tk8.4/demos/widget
lib/vmd/scripts/python/AtomSel.py
lib/vmd/scripts/python/Label.py
lib/vmd/scripts/python/Material.py
lib/vmd/scripts/python/Molecule.py
lib/vmd/scripts/python/VMD.py
lib/vmd/scripts/python/startvmd.py
lib/vmd/scripts/python/testMolecule.py
lib/vmd/scripts/python/testdisplay.py
lib/vmd/plugins/include/vmdplugin.h
lib/vmd/plugins/include/molfile_plugin.h
lib/vmd/plugins/FREEBSD/molfile/cpmdplugin.so
lib/vmd/plugins/FREEBSD/molfile/psfplugin.so
lib/vmd/plugins/FREEBSD/molfile/pdbplugin.so
lib/vmd/plugins/FREEBSD/molfile/dcdplugin.so
lib/vmd/plugins/FREEBSD/molfile/babelplugin.so
lib/vmd/plugins/FREEBSD/molfile/gromacsplugin.so
lib/vmd/plugins/FREEBSD/molfile/parmplugin.so
lib/vmd/plugins/FREEBSD/molfile/crdplugin.so
lib/vmd/plugins/FREEBSD/molfile/namdbinplugin.so
lib/vmd/plugins/FREEBSD/molfile/binposplugin.so
lib/vmd/plugins/FREEBSD/molfile/webpdbplugin.so
lib/vmd/plugins/FREEBSD/molfile/graspplugin.so
lib/vmd/plugins/FREEBSD/molfile/stlplugin.so
lib/vmd/plugins/FREEBSD/molfile/cubeplugin.so
lib/vmd/plugins/FREEBSD/molfile/edmplugin.so
lib/vmd/plugins/FREEBSD/molfile/ccp4plugin.so
lib/vmd/plugins/FREEBSD/molfile/dsn6plugin.so
lib/vmd/plugins/FREEBSD/molfile/brixplugin.so
lib/vmd/plugins/FREEBSD/molfile/pltplugin.so
lib/vmd/plugins/FREEBSD/molfile/parm7plugin.so
lib/vmd/plugins/FREEBSD/molfile/raster3dplugin.so
lib/vmd/plugins/FREEBSD/molfile/rst7plugin.so
lib/vmd/plugins/FREEBSD/molfile/xyzplugin.so
lib/vmd/plugins/FREEBSD/molfile/corplugin.so
lib/vmd/plugins/FREEBSD/molfile/moldenplugin.so
lib/vmd/plugins/FREEBSD/molfile/phiplugin.so
lib/vmd/plugins/FREEBSD/molfile/grdplugin.so
lib/vmd/plugins/FREEBSD/molfile/dxplugin.so
lib/vmd/plugins/FREEBSD/molfile/mapplugin.so
lib/vmd/plugins/FREEBSD/molfile/avsplugin.so
lib/vmd/plugins/FREEBSD/molfile/fs4plugin.so
lib/vmd/plugins/FREEBSD/molfile/libmolfile_plugin.a
lib/vmd/plugins/FREEBSD/molfile/libmolfile_plugin.h
lib/vmd/plugins/FREEBSD/tcl/psfgen1.3/libpsfgen.so
lib/vmd/plugins/FREEBSD/tcl/psfgen1.3/ug.pdf
lib/vmd/plugins/FREEBSD/tcl/psfgen1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.0/ions.top
lib/vmd/plugins/noarch/tcl/autoionize1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.0/autoionize.tcl
lib/vmd/plugins/noarch/tcl/solvate1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/solvate1.2/solvate.tcl
lib/vmd/plugins/noarch/tcl/solvate1.2/wat.psf
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lib/vmd/scripts/tcl
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