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science/py-PyNE: New port: PyNE: The Nuclear Engineering Toolkit

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This commit is contained in:
Yuri Victorovich 2021-10-09 21:45:26 -07:00
parent c12b79b4af
commit 7c0a02b1bf
6 changed files with 342 additions and 0 deletions
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1
science/Makefile
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@ -233,6 +233,7 @@
SUBDIR += py-OpenFermion
SUBDIR += py-PubChemPy
SUBDIR += py-PyFR
SUBDIR += py-PyNE
SUBDIR += py-SimpleSpectral
SUBDIR += py-abipy
SUBDIR += py-access

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science/py-PyNE/Makefile Normal file
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@ -0,0 +1,60 @@
PORTNAME= PyNE
DISTVERSION= 0.7.5
CATEGORIES= science
MASTER_SITES= http://raw.githubusercontent.com/pyne/data/master/:decay \
http://raw.githubusercontent.com/pyne/data/master/:cram \
http://raw.githubusercontent.com/pyne/data/master/:dlc \
http://raw.githubusercontent.com/pyne/data/master/:clc
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTFILES= decay.tar.gz:decay \
cram.tar.gz:cram \
decay-linux-clang.tar.gz:dlc \
cram-linux-clang.tar.gz:clc
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
EXTRACT_ONLY= ${DISTNAME}.tar.gz
MAINTAINER= yuri@FreeBSD.org
COMMENT= PyNE: The Nuclear Engineering Toolkit
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/license.txt
PY_DEPENDS= ${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR}
BUILD_DEPENDS= cmake:devel/cmake \
${PY_DEPENDS}
LIB_DEPENDS= libhdf5.so:science/hdf5 \
libsz.so:science/szip
RUN_DEPENDS= ${PY_DEPENDS}
USES= compiler:c++17-lang fortran python:3.7+
USE_PYTHON= distutils cython flavors
USE_GITHUB= yes
GH_ACCOUNT= pyne
GH_PROJECT= pyne
MAKE_ENV= DESTDIR=${STAGEDIR}
FFLAGS+= -fallow-argument-mismatch
PYDISTUTILS_BUILDARGS= --slow # this chooses slow compilation of sources from {decay,cram}.tar.gz
# over incompatible pre-compiled assembly from {decay,cram}-linux-clang.tar.gz
post-extract:
.for f in decay.tar.gz cram.tar.gz decay-linux-clang.tar.gz cram-linux-clang.tar.gz
@${CP} ${DISTDIR}/${DIST_SUBDIR}/${f} ${WRKSRC}/src
.endfor
do-install:
# install
cd ${INSTALL_WRKSRC} && \
${SETENV} ${MAKE_ENV} ${PYTHON_CMD} ${PYDISTUTILS_SETUP} ${PYDISTUTILS_INSTALL_TARGET}
# strip
${STRIP_CMD} \
${STAGEDIR}${LOCALBASE}/lib/lib*.so \
${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/*.so \
${STAGEDIR}${PYTHON_SITELIBDIR}/pyne/xs/models.so
.include <bsd.port.mk>

11
science/py-PyNE/distinfo Normal file
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@ -0,0 +1,11 @@
TIMESTAMP = 1633733586
SHA256 (PyNE-0.7.5/decay.tar.gz) = aa1aa69cb84685731eb234c046c56f9167a0bcc9686ccd5437f62186ac9bd441
SIZE (PyNE-0.7.5/decay.tar.gz) = 8012492
SHA256 (PyNE-0.7.5/cram.tar.gz) = 5ea1443226234787e0b8ef7f1d4c9cb0a6846b9da00bc843557051ad74e4a2f5
SIZE (PyNE-0.7.5/cram.tar.gz) = 2110526
SHA256 (PyNE-0.7.5/decay-linux-clang.tar.gz) = 6fa05231e7fbfe5994e9a6705131bdcac2fc5845e362d3607e96c46ed418a0db
SIZE (PyNE-0.7.5/decay-linux-clang.tar.gz) = 18904467
SHA256 (PyNE-0.7.5/cram-linux-clang.tar.gz) = 0a7a04b5268db91fea7bec75dbefe3ec23036f9e250aacc6fb353d17d8e84538
SIZE (PyNE-0.7.5/cram-linux-clang.tar.gz) = 20477898
SHA256 (PyNE-0.7.5/pyne-pyne-0.7.5_GH0.tar.gz) = 80143d5e232b89ffd89121363c0e1e615acc28c26f5d7682521eb9baf98311c4
SIZE (PyNE-0.7.5/pyne-pyne-0.7.5_GH0.tar.gz) = 9262728

12
science/py-PyNE/files/patch-cmake_SetupSubPyInstall.cmake.in Normal file
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@ -0,0 +1,12 @@
- make 'install' DESTDIR-aware
--- cmake/SetupSubPyInstall.cmake.in.orig 2021-10-09 05:02:12 UTC
+++ cmake/SetupSubPyInstall.cmake.in
@@ -9,6 +9,7 @@ message(" CMAKE_INSTALL_PREFIX: ${CMAKE_INSTALL_PREFI
message(" CMAKE_CURRENT_BINARY_DIR: ${CMAKE_CURRENT_BINARY_DIR}")
execute_process(COMMAND ${PYTHON_EXECUTABLE} setup_sub.py install
"--prefix=${CMAKE_INSTALL_PREFIX}"
+ "--root=$ENV{DESTDIR}"
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
RESULT_VARIABLE res_var)
if(NOT "${res_var}" STREQUAL "0")

6
science/py-PyNE/pkg-descr Normal file
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@ -0,0 +1,6 @@
PyNE is a suite of tools to aid in computational nuclear science & engineering.
PyNE seeks to provide native implementations of common nuclear algorithms, as
well as Python bindings and I/O support for other industry standard nuclear
codes.
WWW: https://pyne.io/

252
science/py-PyNE/pkg-plist Normal file
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@ -0,0 +1,252 @@
bin/aceviewer
bin/activation_responses.py
bin/expand_tags.py
bin/gtcadis.py
bin/meshtal_to_mesh
bin/nuc_data_make
bin/ptrac_to_hdf5
bin/r2s.py
bin/ssw_combine.py
bin/tape9
include/pyne/_atomic_data.h
include/pyne/_decay.h
include/pyne/atomic_data.h
include/pyne/cram.h
include/pyne/cram.hpp
include/pyne/dagmc_bridge.h
include/pyne/data.h
include/pyne/decay.h
include/pyne/enrichment.h
include/pyne/enrichment_cascade.h
include/pyne/enrichment_symbolic.h
include/pyne/extra_types.h
include/pyne/h5wrap.h
include/pyne/json-forwards.h
include/pyne/json.h
include/pyne/jsoncustomwriter.h
include/pyne/material.h
include/pyne/material_library.h
include/pyne/measure.h
include/pyne/nucname.h
include/pyne/particle.h
include/pyne/pyne.h
include/pyne/rxname.h
include/pyne/source.h
include/pyne/source_sampling.h
include/pyne/tally.h
include/pyne/transmuters.h
include/pyne/utils.h
lib/libpyne.so
%%PYTHON_SITELIBDIR%%/pyne-0.7.1-py%%PYTHON_VER%%.egg-info
%%PYTHON_SITELIBDIR%%/pyne/__init__.pxd
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