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Add rubygem-bio-executables 1.0.0

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bio-executables is a collection of miscellaneous utilities for bioinformatics
that were formerly part of the BioRuby core ("bio" gem). Because of reducing
complexity, they were moved to this gem.

This code has historically been part of the BioRuby gem, but has been split into
its own gem as part of an effort to modularize BioRuby. bio-executables and many
more plugins are available at biogems.info.

WWW: https://github.com/bioruby/bioruby-executables
This commit is contained in:
Sunpoet Po-Chuan Hsieh 2020-07-24 07:08:00 +00:00
parent db12deba96
commit 6b5447a39b
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=543010
4 changed files with 43 additions and 0 deletions
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1
biology/Makefile
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@ -148,6 +148,7 @@
SUBDIR += recombine
SUBDIR += ruby-bio
SUBDIR += rubygem-bio
SUBDIR += rubygem-bio-executables
SUBDIR += samtools
SUBDIR += scrm
SUBDIR += seaview

30
biology/rubygem-bio-executables/Makefile Normal file
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@ -0,0 +1,30 @@
# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
# $FreeBSD$
PORTNAME= bio-executables
PORTVERSION= 1.0.0
CATEGORIES= biology rubygems
MASTER_SITES= RG
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= Collection of miscellaneous utilities for bioinformatics
LICENSE= BSD2CLAUSE RUBY
LICENSE_COMB= dual
LICENSE_FILE_BSD2CLAUSE=${WRKSRC}/BSDL
LICENSE_FILE_RUBY= ${WRKSRC}/COPYING
RUN_DEPENDS= rubygem-bio>=2.0.0:biology/rubygem-bio \
rubygem-bio-old-biofetch-emulator>=0.0.1:biology/rubygem-bio-old-biofetch-emulator
USES= gem
USE_RUBY= yes
NO_ARCH= yes
PLIST_FILES= bin/br_biofetch.rb \
bin/br_bioflat.rb \
bin/br_biogetseq.rb \
bin/br_pmfetch.rb
.include <bsd.port.mk>

3
biology/rubygem-bio-executables/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1595416507
SHA256 (rubygem/bio-executables-1.0.0.gem) = 29f02115bc543d7f39b0c6d4c518719dcae9d112a913c215b988b599a6736b91
SIZE (rubygem/bio-executables-1.0.0.gem) = 15360

9
biology/rubygem-bio-executables/pkg-descr Normal file
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@ -0,0 +1,9 @@
bio-executables is a collection of miscellaneous utilities for bioinformatics
that were formerly part of the BioRuby core ("bio" gem). Because of reducing
complexity, they were moved to this gem.
This code has historically been part of the BioRuby gem, but has been split into
its own gem as part of an effort to modularize BioRuby. bio-executables and many
more plugins are available at biogems.info.
WWW: https://github.com/bioruby/bioruby-executables