- update grappa to 2.0

- utilize PLIST_FILES
- unbreak it on 4.x
- update maintainer's email

PR:		79241
Submitted by:	David A. Bader <dbader@ece.unm.edu>

biology/grappa/Makefile

@@ -1,23 +1,26 @@
 # New ports collection makefile for:	grappa
 # Date created:		30 June 2001
-# Whom:                 dbader@eece.unm.edu
+# Whom:                 dbader@ece.unm.edu
 #
 # $FreeBSD$
 #
 
 PORTNAME=	grappa
-PORTVERSION=	1.0.3
-PORTREVISION=	1
+PORTVERSION=	2.0
 CATEGORIES=	biology
-MASTER_SITES=	http://www.cs.unm.edu/~moret/
-DISTNAME=	GRAPPA-1.03
+MASTER_SITES=	http://www.cs.unm.edu/~moret/GRAPPA/
+DISTNAME=	GRAPPA20
 
-MAINTAINER=	dbader@eece.unm.edu
+MAINTAINER=	dbader@ece.unm.edu
 COMMENT=	Genome Rearrangements Analysis and Phylogeny Software
 
-BUILD_DEPENDS=	${LOCALBASE}/lib/libconcorde.a:${PORTSDIR}/math/concorde
-
 USE_GMAKE=	yes
+USE_REINPLACE=	yes
+
+PLIST_FILES=	bin/grappa bin/invdist bin/distmat
+
+post-patch:
+	@${REINPLACE_CMD} -e 's/-lpthread/${PTHREAD_LIBS}/g' ${WRKSRC}/${MAKEFILE}
 
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/grappa ${PREFIX}/bin

biology/grappa/distinfo

@@ -1,2 +1,2 @@
-MD5 (GRAPPA-1.03.tar.gz) = 4bc58525d0a6ad91f3db64175d4db176
-SIZE (GRAPPA-1.03.tar.gz) = 82952
+MD5 (GRAPPA20.tar.gz) = 1422693550004415795b2c7872fe9649
+SIZE (GRAPPA20.tar.gz) = 172261

biology/grappa/files/patch-aa

@@ -1,16 +0,0 @@
---- Makefile.orig	Wed Mar 14 01:21:45 2001
-+++ Makefile	Fri Jun 29 20:36:40 2001
-@@ -19,10 +19,10 @@
- 
- ifeq ($(USE_CONCORDE),YES)
- # Set CONCORDE_ROOT to the location of the compiler concorde libraries
--  CONCORDE_ROOT   = $(HOME)/concorde
--  CONCORDE_INC    = $(CONCORDE_ROOT)/INCLUDE
-+  CONCORDE_ROOT   = /usr/local
-+  CONCORDE_INC    = $(CONCORDE_ROOT)/include/concorde
-   CONCORDE_CFLAGS = -I$(CONCORDE_INC) -DCONCORDE
--  CONCORDE_LIB    = $(CONCORDE_ROOT)/concorde.a
-+  CONCORDE_LIB    = $(CONCORDE_ROOT)/lib/libconcorde.a
- else
-   CONCORDE_CFLAGS =
-   CONCORDE_LIB    =

biology/grappa/pkg-plist

@@ -1,3 +0,0 @@
-bin/grappa
-bin/invdist
-bin/distmat