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- Update port to version 2.2g

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This commit is contained in:
Johann Visagie 2001-08-22 13:18:10 +00:00
parent 8aff3a669c
commit 4e8aeac440
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=46641
4 changed files with 34 additions and 223 deletions
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25
biology/hmmer/Makefile
View File

@ -6,28 +6,29 @@
#
PORTNAME= hmmer
PORTVERSION= 2.1.1
PORTVERSION= 2.2.g
CATEGORIES= biology
MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/
EXTRACT_SUFX= .tar.Z
MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/${VERSIONSTRING}/
DISTNAME= ${PORTNAME}-${VERSIONSTRING}
MAINTAINER= wjv@FreeBSD.org
GNU_CONFIGURE= yes
USE_PERL5= yes
VERSIONSTRING= ${PORTVERSION:C|\.([^.]*)$|\1|}
MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \
hmmer.1 hmmpfam.1 hmmsearch.1 hmmfetch.1 hmmindex.1 alistat.1 \
getseq.1 seqstat.1 sreformat.1
HMMER_DOCDIR= ${PREFIX}/share/doc/${PORTNAME}
DOCFILES= 00README COPYRIGHT NOTES Userguide.pdf
MAN1= afetch.1 alistat.1 hmmalign.1 hmmbuild.1 hmmcalibrate.1 \
hmmconvert.1 hmmemit.1 hmmer.1 hmmfetch.1 hmmindex.1 \
hmmpfam.1 hmmsearch.1 seqstat.1 sfetch.1 shuffle.1 \
sreformat.1
post-install:
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${HMMER_DOCDIR}
@ ${INSTALL_DATA} ${WRKSRC}/Userguide/Userguide.pdf ${HMMER_DOCDIR}
@ ${INSTALL_DATA} ${WRKSRC}/Userguide/Userguide.ps ${HMMER_DOCDIR}
@ ${TAR} xzfC ${WRKSRC}/Userguide/hmmer-html.tar.Z ${HMMER_DOCDIR}
@ ${MKDIR} ${DOCSDIR}
.for docfile in ${DOCFILES}
@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
.endfor
.endif
.if !defined(BATCH)
@ ${CAT} ${PKGMESSAGE}

2
biology/hmmer/distinfo
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@ -1 +1 @@
MD5 (hmmer-2.1.1.tar.Z) = 0f98910a3507b4d52fbe82adc6fa89b5
MD5 (hmmer-2.2g.tar.gz) = d7def2007a0aaf2eafb9a96a07986b8c

19
biology/hmmer/files/patch-Makefile.in
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@ -1,5 +1,5 @@
--- Makefile.in.orig Thu Dec 10 01:11:07 1998
+++ Makefile.in Wed Jul 4 15:41:09 2001
--- Makefile.in.orig Mon Aug 6 01:55:36 2001
+++ Makefile.in Wed Aug 22 14:52:30 2001
@@ -34,7 +34,7 @@
# how to install the man pages;
# cp is generally fine, unless you preformat your pages.
@ -9,12 +9,19 @@
MANSUFFIX = 1
# your compiler and compiler flags
@@ -142,7 +142,7 @@
# installs man pages in MANDIR/man1/ (if MANSUFFIX is 1)
@@ -144,12 +144,12 @@
# installs man pages in MANDIR/man1/ (e.g. if MANSUFFIX is 1)
install:
for file in $(PROGS) $(SQUIDPROGS) $(PVMPROGS); do\
- cp binaries/$$file $(BINDIR)/;\
+ $(BSD_INSTALL_PROGRAM) binaries/$$file $(BINDIR)/;\
done
for file in hmmer $(PROGS) $(SQUIDPROGS); do\
$(INSTMAN) Man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
- for file in hmmer $(PROGS) $(SQUIDPROGS); do\
+ for file in hmmer $(PROGS); do\
$(INSTMAN) documentation/man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
done
- for file in $(SQUIDPROGS); do\
+ for file in afetch alistat seqstat sfetch shuffle sreformat; do\
$(INSTMAN) squid/Man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
done

211
biology/hmmer/pkg-plist
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@ -1,5 +1,5 @@
bin/afetch
bin/alistat
bin/getseq
bin/hmmalign
bin/hmmbuild
bin/hmmcalibrate
@ -10,209 +10,12 @@ bin/hmmindex
bin/hmmpfam
bin/hmmsearch
bin/seqstat
bin/sfetch
bin/shuffle
bin/sindex
bin/sreformat
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%%PORTDOCS%%share/doc/hmmer/COPYRIGHT
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%%PORTDOCS%%share/doc/hmmer/Userguide.ps
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%%PORTDOCS%%share/doc/hmmer/hmmer-html/TMP/ORIG_MAP.db
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%%PORTDOCS%%share/doc/hmmer/hmmer-html/TMP/depends_on
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%%PORTDOCS%%share/doc/hmmer/hmmer-html/TMP/new_environment
%%PORTDOCS%%share/doc/hmmer/hmmer-html/TMP/new_theorem
%%PORTDOCS%%share/doc/hmmer/hmmer-html/TMP/part001
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