MINC (Medical Imaging NetCDF) is a medical imaging data format and an
associated set of tools and libraries. MINC was created in 1993 by Peter Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological Institute. Many others have contributed to the design and implementation MINC over the years. PR: ports/91918 Submitted by: Jason W. Bacon <bacon (at) smithers.neuro.mcw.edu>
This commit is contained in:
Thierry Thomas
parent
d446f531b3
commit
3b5fa65f18
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=155836
@ -43,6 +43,7 @@
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SUBDIR += mayavi
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SUBDIR += mbdyn
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SUBDIR += mcstas
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SUBDIR += minc
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SUBDIR += mmtk
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SUBDIR += mpb
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SUBDIR += mpqc
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80
science/minc/Makefile
Normal file
80
science/minc/Makefile
Normal file
@ -0,0 +1,80 @@
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############################################################################
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# New ports collection Makefile for: minc 1.x (Medical Imaging NetCDF)
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# Date created: 21 Dec 2005
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# Whom: jbacon
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#
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# $FreeBSD$
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#
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############################################################################
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# http://www.bic.mni.mcgill.ca/software/minc/
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# is the ultimate source for MINC, and will always contain the latest
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# source release. If this port is not up to date enough for you,
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# you can download the latest sources and build manually. On FreeBSD,
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# you must configure with the environment variable LDFLAGS set to
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# ${LOCALBASE}/lib so that the configure script will find libnetcdf.
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# Of course, the netcdf port must be installed first.
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PORTNAME= minc
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PORTVERSION= 1.4
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CATEGORIES= science biology
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MASTER_SITES= http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
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http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
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MAINTAINER= bacon@smithers.neuro.mcw.edu
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COMMENT= Medical Imaging NetCDF
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LIB_DEPENDS= netcdf.1:${PORTSDIR}/science/netcdf
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INSTALLS_SHLIB= yes
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USE_AUTOTOOLS= libtool:15
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# Build parameters
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#WRKSRC= ${WRKDIR}/minc-${PORTVERSION}
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MAN1= dcm2mnc.1 \
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ecattominc.1 \
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invert_raw_image.1 \
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minc_modify_header.1 \
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mincaverage.1 \
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minccalc.1 \
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mincconcat.1 \
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minccopy.1 \
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mincdiff.1 \
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mincedit.1 \
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mincexpand.1 \
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mincextract.1 \
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mincheader.1 \
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mincinfo.1 \
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minclookup.1 \
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mincmakescalar.1 \
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mincmakevector.1 \
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mincmath.1 \
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mincpik.1 \
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mincresample.1 \
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mincreshape.1 \
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mincstats.1 \
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minctoecat.1 \
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minctoraw.1 \
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mincview.1 \
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mincwindow.1 \
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mnc2nii.1 \
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nii2mnc.1 \
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rawtominc.1 \
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transformtags.1 \
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upet2mnc.1 \
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voxeltoworld.1 \
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xfmconcat.1 \
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xfminvert.1
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MAN3= ParseArgv.3
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CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \
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LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib"
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CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes
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CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
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post-install:
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${CAT} ${PKGMESSAGE}
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.include <bsd.port.mk>
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3
science/minc/distinfo
Normal file
3
science/minc/distinfo
Normal file
@ -0,0 +1,3 @@
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MD5 (minc-1.4.tar.gz) = 873a6deed8109f95d29a197bad9f6070
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SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
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SIZE (minc-1.4.tar.gz) = 1213768
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10
science/minc/pkg-descr
Normal file
10
science/minc/pkg-descr
Normal file
@ -0,0 +1,10 @@
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MINC (Medical Imaging NetCDF) is a medical imaging data format and an
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associated set of tools and libraries. MINC was created in 1993 by Peter
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Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
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Institute. Many others have contributed to the design and implementation
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MINC over the years.
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WWW: http://www.bic.mni.mcgill.ca/software/minc/
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Port maintainer: Jason W. Bacon
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bacon@smithers.neuro.mcw.edu
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8
science/minc/pkg-message
Normal file
8
science/minc/pkg-message
Normal file
@ -0,0 +1,8 @@
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=============================================================================
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For questions or comments regarding this port, please contact the
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port maintainer: bacon@smithers.neuro.mcw.edu
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For MINC usage, please visit the MINC WEB site at
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http://www.bic.mni.mcgill.ca/software/minc/
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=============================================================================
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66
science/minc/pkg-plist
Normal file
66
science/minc/pkg-plist
Normal file
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bin/dcm2mnc
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bin/ecattominc
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bin/invert_raw_image
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bin/minc_modify_header
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bin/mincaverage
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bin/minccalc
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bin/mincconcat
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bin/minccopy
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bin/mincdiff
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bin/mincedit
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bin/mincexpand
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bin/mincextract
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bin/mincheader
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bin/minchistory
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bin/mincinfo
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bin/minclookup
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bin/mincmakescalar
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bin/mincmakevector
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bin/mincmath
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bin/mincpik
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bin/mincresample
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bin/mincreshape
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bin/mincstats
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bin/minctoecat
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bin/minctoraw
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bin/mincview
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bin/mincwindow
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bin/mnc2nii
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bin/nii2mnc
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bin/rawtominc
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bin/transformtags
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bin/upet2mnc
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bin/voxeltoworld
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bin/worldtovoxel
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bin/xfmconcat
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bin/xfminvert
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include/ParseArgv.h
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include/minc.h
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include/minc_simple.h
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include/nd_loop.h
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include/time_stamp.h
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include/volume_io.h
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include/volume_io/alloc.h
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include/volume_io/arrays.h
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include/volume_io/basic.h
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include/volume_io/def_math.h
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include/volume_io/files.h
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include/volume_io/geom_structs.h
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include/volume_io/geometry.h
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include/volume_io/internal_volume_io.h
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include/volume_io/multidim.h
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include/volume_io/progress.h
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include/volume_io/string_funcs.h
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include/volume_io/system_dependent.h
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include/volume_io/transforms.h
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include/volume_io/vol_io_prototypes.h
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include/volume_io/volume.h
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include/volume_io/volume_cache.h
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include/voxel_loop.h
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lib/libminc.a
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lib/libminc.so
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lib/libminc.so.1
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lib/libvolume_io.a
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lib/libvolume_io.so
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lib/libvolume_io.so.0
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@dirrm include/volume_io
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80
science/minc2/Makefile
Normal file
80
science/minc2/Makefile
Normal file
@ -0,0 +1,80 @@
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############################################################################
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# New ports collection Makefile for: minc 1.x (Medical Imaging NetCDF)
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# Date created: 21 Dec 2005
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# Whom: jbacon
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#
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# $FreeBSD$
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#
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############################################################################
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# http://www.bic.mni.mcgill.ca/software/minc/
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# is the ultimate source for MINC, and will always contain the latest
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# source release. If this port is not up to date enough for you,
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# you can download the latest sources and build manually. On FreeBSD,
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# you must configure with the environment variable LDFLAGS set to
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# ${LOCALBASE}/lib so that the configure script will find libnetcdf.
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# Of course, the netcdf port must be installed first.
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PORTNAME= minc
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PORTVERSION= 1.4
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CATEGORIES= science biology
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MASTER_SITES= http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
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http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
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MAINTAINER= bacon@smithers.neuro.mcw.edu
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COMMENT= Medical Imaging NetCDF
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LIB_DEPENDS= netcdf.1:${PORTSDIR}/science/netcdf
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INSTALLS_SHLIB= yes
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USE_AUTOTOOLS= libtool:15
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# Build parameters
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#WRKSRC= ${WRKDIR}/minc-${PORTVERSION}
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MAN1= dcm2mnc.1 \
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ecattominc.1 \
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invert_raw_image.1 \
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minc_modify_header.1 \
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mincaverage.1 \
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minccalc.1 \
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mincconcat.1 \
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minccopy.1 \
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mincdiff.1 \
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mincedit.1 \
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mincexpand.1 \
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mincextract.1 \
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mincheader.1 \
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mincinfo.1 \
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minclookup.1 \
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mincmakescalar.1 \
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mincmakevector.1 \
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mincmath.1 \
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mincpik.1 \
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mincresample.1 \
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mincreshape.1 \
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mincstats.1 \
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minctoecat.1 \
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minctoraw.1 \
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mincview.1 \
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mincwindow.1 \
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mnc2nii.1 \
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nii2mnc.1 \
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rawtominc.1 \
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transformtags.1 \
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upet2mnc.1 \
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voxeltoworld.1 \
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xfmconcat.1 \
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xfminvert.1
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MAN3= ParseArgv.3
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CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \
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LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib"
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CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes
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CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
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post-install:
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${CAT} ${PKGMESSAGE}
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.include <bsd.port.mk>
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3
science/minc2/distinfo
Normal file
3
science/minc2/distinfo
Normal file
@ -0,0 +1,3 @@
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MD5 (minc-1.4.tar.gz) = 873a6deed8109f95d29a197bad9f6070
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SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
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SIZE (minc-1.4.tar.gz) = 1213768
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10
science/minc2/pkg-descr
Normal file
10
science/minc2/pkg-descr
Normal file
@ -0,0 +1,10 @@
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MINC (Medical Imaging NetCDF) is a medical imaging data format and an
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associated set of tools and libraries. MINC was created in 1993 by Peter
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Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological
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Institute. Many others have contributed to the design and implementation
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MINC over the years.
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WWW: http://www.bic.mni.mcgill.ca/software/minc/
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Port maintainer: Jason W. Bacon
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bacon@smithers.neuro.mcw.edu
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8
science/minc2/pkg-message
Normal file
8
science/minc2/pkg-message
Normal file
@ -0,0 +1,8 @@
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=============================================================================
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For questions or comments regarding this port, please contact the
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port maintainer: bacon@smithers.neuro.mcw.edu
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For MINC usage, please visit the MINC WEB site at
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http://www.bic.mni.mcgill.ca/software/minc/
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=============================================================================
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66
science/minc2/pkg-plist
Normal file
66
science/minc2/pkg-plist
Normal file
@ -0,0 +1,66 @@
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bin/dcm2mnc
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bin/ecattominc
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bin/invert_raw_image
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bin/minc_modify_header
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bin/mincaverage
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bin/minccalc
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bin/mincconcat
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bin/minccopy
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bin/mincdiff
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bin/mincedit
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bin/mincexpand
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bin/mincextract
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bin/mincheader
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bin/minchistory
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bin/mincinfo
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bin/minclookup
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bin/mincmakescalar
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bin/mincmakevector
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bin/mincmath
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bin/mincpik
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bin/mincresample
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bin/mincreshape
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bin/mincstats
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bin/minctoecat
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bin/minctoraw
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bin/mincview
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bin/mincwindow
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bin/mnc2nii
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bin/nii2mnc
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bin/rawtominc
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bin/transformtags
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bin/upet2mnc
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bin/voxeltoworld
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bin/worldtovoxel
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bin/xfmconcat
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bin/xfminvert
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include/ParseArgv.h
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include/minc.h
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include/minc_simple.h
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include/nd_loop.h
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include/time_stamp.h
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include/volume_io.h
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include/volume_io/alloc.h
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include/volume_io/arrays.h
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include/volume_io/basic.h
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include/volume_io/def_math.h
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include/volume_io/files.h
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include/volume_io/geom_structs.h
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include/volume_io/geometry.h
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include/volume_io/internal_volume_io.h
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include/volume_io/multidim.h
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include/volume_io/progress.h
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include/volume_io/string_funcs.h
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include/volume_io/system_dependent.h
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include/volume_io/transforms.h
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include/volume_io/vol_io_prototypes.h
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include/volume_io/volume.h
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include/volume_io/volume_cache.h
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include/voxel_loop.h
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lib/libminc.a
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lib/libminc.so
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lib/libminc.so.1
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lib/libvolume_io.a
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lib/libvolume_io.so
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lib/libvolume_io.so.0
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@dirrm include/volume_io
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Block a user