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Add p5-Bio-Variation 1.7.4

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Bio::Variation::* provides BioPerl variation-related functionality.

WWW: https://metacpan.org/release/Bio-Variation
This commit is contained in:
Sunpoet Po-Chuan Hsieh 2019-12-08 16:49:31 +00:00
parent 2b9ee80386
commit 1f75530f6c
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=519320
5 changed files with 64 additions and 0 deletions
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1
biology/Makefile
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@ -98,6 +98,7 @@
SUBDIR += p5-Bio-NEXUS
SUBDIR += p5-Bio-Phylo
SUBDIR += p5-Bio-SCF
SUBDIR += p5-Bio-Variation
SUBDIR += p5-BioPerl
SUBDIR += p5-BioPerl-Run
SUBDIR += p5-TrimGalore

30
biology/p5-Bio-Variation/Makefile Normal file
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@ -0,0 +1,30 @@
# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
# $FreeBSD$
PORTNAME= Bio-Variation
PORTVERSION= 1.7.4
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= BioPerl variation-related functionality
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${RUN_DEPENDS}
RUN_DEPENDS= p5-Bio-DB-EMBL>=0:biology/p5-Bio-DB-EMBL \
p5-Bio-DB-NCBIHelper>=0:biology/p5-Bio-DB-NCBIHelper \
p5-BioPerl>=0:biology/p5-BioPerl \
p5-IO-String>=0:devel/p5-IO-String \
p5-XML-Twig>=0:textproc/p5-XML-Twig \
p5-XML-Writer>=0.400:textproc/p5-XML-Writer
USES= perl5
USE_PERL5= configure
NO_ARCH= yes
.include <bsd.port.mk>

3
biology/p5-Bio-Variation/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1575793787
SHA256 (Bio-Variation-1.7.4.tar.gz) = b5dc609c5bbd39937cdce0e5cbf299a2e2cf30c235fe6f71c904ae7dc1697b56
SIZE (Bio-Variation-1.7.4.tar.gz) = 60449

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biology/p5-Bio-Variation/pkg-descr Normal file
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@ -0,0 +1,3 @@
Bio::Variation::* provides BioPerl variation-related functionality.
WWW: https://metacpan.org/release/Bio-Variation

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biology/p5-Bio-Variation/pkg-plist Normal file
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bin/bp_flanks
%%SITE_PERL%%/Bio/Variation.pm
%%SITE_PERL%%/Bio/Variation/AAChange.pm
%%SITE_PERL%%/Bio/Variation/AAReverseMutate.pm
%%SITE_PERL%%/Bio/Variation/Allele.pm
%%SITE_PERL%%/Bio/Variation/DNAMutation.pm
%%SITE_PERL%%/Bio/Variation/IO.pm
%%SITE_PERL%%/Bio/Variation/IO/flat.pm
%%SITE_PERL%%/Bio/Variation/IO/xml.pm
%%SITE_PERL%%/Bio/Variation/README
%%SITE_PERL%%/Bio/Variation/RNAChange.pm
%%SITE_PERL%%/Bio/Variation/SNP.pm
%%SITE_PERL%%/Bio/Variation/SeqDiff.pm
%%SITE_PERL%%/Bio/Variation/VariantI.pm
%%PERL5_MAN1%%/bp_flanks.1.gz
%%PERL5_MAN3%%/Bio::Variation.3.gz
%%PERL5_MAN3%%/Bio::Variation::AAChange.3.gz
%%PERL5_MAN3%%/Bio::Variation::AAReverseMutate.3.gz
%%PERL5_MAN3%%/Bio::Variation::Allele.3.gz
%%PERL5_MAN3%%/Bio::Variation::DNAMutation.3.gz
%%PERL5_MAN3%%/Bio::Variation::IO.3.gz
%%PERL5_MAN3%%/Bio::Variation::IO::flat.3.gz
%%PERL5_MAN3%%/Bio::Variation::IO::xml.3.gz
%%PERL5_MAN3%%/Bio::Variation::RNAChange.3.gz
%%PERL5_MAN3%%/Bio::Variation::SNP.3.gz
%%PERL5_MAN3%%/Bio::Variation::SeqDiff.3.gz
%%PERL5_MAN3%%/Bio::Variation::VariantI.3.gz