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science/vmd: update to 1.9.3

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- update MASTER_SITES to use upstream stride (the old - repackages - sources
   were no longer working).
 - take maintainership: although I don't use the software I am happy to respond
   to PR's and check for updates periodically,
 - add license information for each source:
   - vmd: custom license that requires the user to explicitly download (and
          accept the license before downloading).  Mark the license as
          auto-accept here as the present of the DISTFILE will indicate that
          the license has been accepted
   - tachyon: standard 3-clause BSD license :-)
   - stride: almost BSD license, except only for academic use (i.e.
             non-commersial) and a requirement to report bugs to the author.
             Add a plain text copy of the license file to the port.
   - add missing dependencies: gl, x11
   - fix detection of python.
   - simplify configure patch.
   - update pkg-plist for changes in plugin versions.
This commit is contained in:
David Naylor 2017-01-08 17:36:15 +00:00
parent eb2cee80bf
commit 153bb9688c
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=430880
5 changed files with 522 additions and 430 deletions
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66
science/vmd/Makefile
View File

@ -2,19 +2,22 @@
# $FreeBSD$
PORTNAME= vmd
DISTVERSION= 1.9.1
PORTREVISION= 5
DISTVERSION= 1.9.3
CATEGORIES= science graphics python tcl tk
MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b2/:tachyon \
http://www.photonlimited.com/~johns/tachyon/files/0.99b2/:tachyon \
http://www.ks.uiuc.edu/Research/vmd/extsrcs/:stride
MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \
http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \
http://webclu.bio.wzw.tum.de/stride/:stride \
ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride
DISTFILES= ${VMD_DIST} \
${TACHYON_DIST}:tachyon \
${STRIDE_DIST}:stride
MAINTAINER= ports@FreeBSD.org
MAINTAINER= dbn@FreeBSD.org
COMMENT= Molecular visualization program
LICENSE= VMD BSD3CLAUSE STRIDE
LICENSE_COMB= multi
BUILD_DEPENDS= makedepend:devel/makedepend \
${PYNUMERIC}
LIB_DEPENDS= libtcl85.so:lang/tcl85 \
@ -23,18 +26,37 @@ LIB_DEPENDS= libtcl85.so:lang/tcl85 \
libnetcdf.so:science/netcdf
RUN_DEPENDS= ${PYNUMERIC}
LICENSE_FILE_VMD= ${WRKSRC}/LICENSE
LICENSE_PERMS_VMD= auto-accept
LICENSE_NAME_VMD= Visaul Molecular Dynamics Software License Agreement
LICENSE_DISTFILES_VMD= ${VMD_DIST}
LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/lib/tachyon/Copyright
LICENSE_DISTFILES_BSD3CLAUSE= ${TACHYON_DIST}
LICENSE_TEXT_STRIDE= ${FILESDIR}/stride.txt
LICENSE_PERMS_STRIDE= dist-mirror pkg-mirror auto-accept
LICENSE_NAME_STRIDE= Stride Copyright Notice
LICENSE_DISTFILES_STRIDE=${STRIDE_DIST}
USES= gmake perl5 python
USE_PERL5= build
USE_GL= glu
USE_GCC= any
USE_GL= gl glu
USE_XORG= x11
ONLY_FOR_ARCHS= i386 amd64
RESTRICTED= License has restrictions
CONFIGURE_ENV= PYTHON_INCLUDE_DIR=${PYTHON_INCLUDEDIR} \
PYTHON_LIBRARY_DIR=${PYTHON_LIBDIR} \
NUMPY_INCLUDE_DIR=${PYTHON_SITELIBDIR}/numpy/core/include \
NUMPY_LIBRARY_DIR=${PYTHON_SITELIBDIR}
INSTALL_WRKSRC= ${WRKSRC}/src
VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz
TACHYON_DIST= tachyon-0.99b2.tar.gz
STRIDE_DIST= Stride_src.tar.Z
TACHYON_DIST= tachyon-0.99b6.tar.gz
STRIDE_DIST= stride.tar.gz
STRIDE_DOC= stride.doc
.include <bsd.port.pre.mk>
@ -58,7 +80,7 @@ IGNORE= license restrictions require manual fetching of the distribution\
.endif
do-extract:
${MKDIR} ${WRKDIR}
${MKDIR} ${WRKDIR} ${WRKSRC}/lib/stride
${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR}
${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf
${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib
@ -68,10 +90,10 @@ post-patch:
${REINPLACE_CMD} \
-e "s|-ltk8.5|-ltk85|" \
-e "s|-ltcl8.5|-ltcl85|" \
-e "s%\$$python_dir/lib_\$$config_arch%${PREFIX}%" \
-e "s|python2.5|${PYTHON_VERSION}|" \
-e "s|-lpython2.5|-l${PYTHON_VERSION}${PYTHON_ABIVER}|" \
-e "s|%%PREFIX%%|${PREFIX}|g" \
-e "s|/usr/local|${LOCALBASE}|g" \
-e "s|-fno-for-scope||g" \
${WRKSRC}/configure
${REINPLACE_CMD} "s/\"gcc\"/\"${CC}\"/;s/\"g++\"/\"${CXX}\"/" \
${WRKSRC}/configure
@ -85,18 +107,18 @@ post-patch:
${WRKSRC}/lib/stride/Makefile \
${WRKSRC}/lib/surf/Makefile \
${WRKSRC}/lib/tachyon/unix/Make-arch \
${WRKDIR}/plugins/cionize/mcudahacks/Makefile.specialbuilds \
${WRKDIR}/plugins/cionize/Makefile.specialbuilds \
${WRKDIR}/plugins/cionize/Makefile.mine \
${WRKDIR}/plugins/cionize/Makefile.testing \
${WRKDIR}/plugins/Make-arch \
${WRKDIR}/plugins/molfile_plugin/f77/Makefile
${REINPLACE_CMD} -E "s/(CXX[[:space:]]*=[[:space:]]*)g\+\+/\1${CXX}/" \
${WRKDIR}/plugins/cionize/Makefile.specialbuilds \
${WRKDIR}/plugins/fmtool/Makefile.specialbuilds \
${WRKDIR}/plugins/hesstrans/src/foo/Makefile \
${WRKDIR}/plugins/hesstrans/src/foo/nm_gnu.mak \
${WRKDIR}/plugins/Make-arch
${REINPLACE_CMD} -e "s/return *;/return 0;/g" \
${WRKSRC}/lib/surf/*.c
do-build:
${SETENV} ${MAKE_ENV} ${MAKE_CMD} bsd -C ${WRKSRC}/lib/tachyon/unix \
@ -118,13 +140,12 @@ do-build:
&& ${MV} ${WRKSRC}/lib/stride/stride \
${WRKSRC}/lib/stride/stride_${VMD_ARCH}
do-install:
${SETENV} ${MAKE_ENV} DESTDIR=${STAGEDIR} \
${MAKE_CMD} -C ${WRKSRC}/src install
post-install:
${REINPLACE_CMD} -i '' -e 's|${STAGEDIR}||g' ${STAGEDIR}${PREFIX}/bin/vmd
${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \
${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so
.for f in tcl/autopsf1.3/psfcheck.so tcl/hesstrans1.0/hesstrans.so \
tcl/mutator1.4/libalchemify.so tcl/pmepot1.0/libpmepot.so \
.for f in tcl/autopsf1.6/psfcheck.so tcl/hesstrans1.0/hesstrans.so \
tcl/mutator1.5/libalchemify.so tcl/pmepot1.0/libpmepot.so \
tcl/psfgen1.6/libpsfgen.so tcl/rnaview1.1/rnaview \
tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \
tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \
@ -133,7 +154,8 @@ do-install:
tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \
tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \
tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \
bin/catdcd4.0/catdcd bin/cionize1.0/cionize
tcl/bossconvert1.0/Topology \
bin/catdcd5.1/catdcd bin/cionize1.0/cionize
${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f}
.endfor

13
science/vmd/distinfo
View File

@ -1,6 +1,7 @@
SHA256 (vmd-1.9.1.src.tar.gz) = 54aa88e03d86d763383e7b98592a152c9d68e78383e13af0dd2aca09b002491f
SIZE (vmd-1.9.1.src.tar.gz) = 30748110
SHA256 (tachyon-0.99b2.tar.gz) = 3bd8dd6ad78c6b2153e985645b385357eb42f3908a2269a7cfe7f9afa35da012
SIZE (tachyon-0.99b2.tar.gz) = 3352908
SHA256 (Stride_src.tar.Z) = c40f7de64947ebab7ec49511c0d264b08bc0fcbc703014bdc85d83a7389be230
SIZE (Stride_src.tar.Z) = 100329
TIMESTAMP = 1482469862
SHA256 (vmd-1.9.3.src.tar.gz) = 5bdc314dc836d620fe510ed4b6c3dbe3cf66525b61680ffec4e2563cf495f128
SIZE (vmd-1.9.3.src.tar.gz) = 43981314
SHA256 (tachyon-0.99b6.tar.gz) = f4dcaf9c76a4f49310f56254390f9611c22e353947a1745a8c623e8bc8119b97
SIZE (tachyon-0.99b6.tar.gz) = 2981568
SHA256 (stride.tar.gz) = 51a8bc2988bb184bd08216124f61725225bb1a6f563bdf8cd35154cb5d621c1a
SIZE (stride.tar.gz) = 318997

83
science/vmd/files/patch-configure
View File

@ -1,19 +1,19 @@
--- configure.orig 2012-02-02 16:53:54.000000000 +0900
+++ configure 2014-08-28 16:42:38.000000000 +0900
--- configure.orig 2016-12-01 07:11:33 UTC
+++ configure
@@ -13,10 +13,10 @@
$install_name = "vmd";
# Directory where VMD startup script is installed, should be in users' paths.
-$install_bin_dir="/usr/local/bin";
+$install_bin_dir="%%PREFIX%%/bin";
+$install_bin_dir="\${DESTDIR}%%PREFIX%%/bin";
# Directory where VMD files and executables are installed
-$install_library_dir="/usr/local/lib/$install_name";
+$install_library_dir="%%PREFIX%%/lib/$install_name";
+$install_library_dir="\${DESTDIR}%%PREFIX%%/lib/$install_name";
# optionally override hard-coded defaults above with environment variables
@@ -788,8 +788,8 @@
@@ -1105,8 +1105,8 @@ if ($config_liboptix) {
# This may be commented out if not required.
$libtachyon_defines = "-DVMDLIBTACHYON";
$libtachyon_dir = "$vmd_library_dir/tachyon";
@ -24,12 +24,12 @@
$libtachyon_libs = "-ltachyon";
@libtachyon_cc = ();
@libtachyon_cu = ();
@@ -2942,10 +2942,10 @@
@@ -3187,10 +3187,10 @@ DEFINES = $DEFINES
# compiler and compiler directives
CC = $arch_cc
-CFLAGS = $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) $rpm_optflags
+CFLAGS += $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS)
+CFLAGS = $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS)
CCPP = $arch_ccpp
-CPPFLAGS = $arch_opt_flag $arch_cppopts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) $rpm_optflags
@ -37,72 +37,3 @@
NVCC = $arch_nvcc
NVCCFLAGS = $arch_nvccflags -DARCH_$config_arch \$(DEFINES) \$(INCDIRS)
@@ -2997,38 +2997,38 @@
\$(COMPILERC) \$(RCFLAGS)
install:
- if [ ! -d "$install_library_dir" ]; then \\
- \$(MAKEDIR) "$install_library_dir" ; \\
+ if [ ! -d "\${DESTDIR}$install_library_dir" ]; then \\
+ \$(MAKEDIR) "\${DESTDIR}$install_library_dir" ; \\
fi ; \\
- if [ ! -d "$install_bin_dir" ]; then \\
- \$(MAKEDIR) "$install_bin_dir" ; \\
+ if [ ! -d "\${DESTDIR}$install_bin_dir" ]; then \\
+ \$(MAKEDIR) "\${DESTDIR}$install_bin_dir" ; \\
fi ; \\
- if [ ! -d "$install_library_dir"/doc ]; then \\
- \$(MAKEDIR) "$install_library_dir"/doc; \\
+ if [ ! -d "\${DESTDIR}$install_library_dir"/doc ]; then \\
+ \$(MAKEDIR) "\${DESTDIR}$install_library_dir"/doc; \\
fi
- -\$(COPY) ../Announcement "$install_library_dir"
- -\$(COPY) ../README "$install_library_dir"
- -\$(COPY) ../LICENSE "$install_library_dir"
- -\$(COPY) $vmd_doc_dir/ug.pdf "$install_library_dir"/doc
- if [ -f $install_library_dir/$config_progname ]; then \\
- \$(MOVE) "$install_library_dir/$config_progname" "$install_library_dir/OLD_$config_progname" ; \$(DELETE) "$install_library_dir/OLD_$config_progname" ; fi
- -\$(COPY) ../$config_arch/$config_progname "$install_library_dir"
+ -\$(COPY) ../Announcement "\${DESTDIR}$install_library_dir"
+ -\$(COPY) ../README "\${DESTDIR}$install_library_dir"
+ -\$(COPY) ../LICENSE "\${DESTDIR}$install_library_dir"
+ -\$(COPY) $vmd_doc_dir/ug.pdf "\${DESTDIR}$install_library_dir"/doc
+ if [ -f \${DESTDIR}$install_library_dir/$config_progname ]; then \\
+ \$(MOVE) "\${DESTDIR}$install_library_dir/$config_progname" "\${DESTDIR}$install_library_dir/OLD_$config_progname" ; \$(DELETE) "\${DESTDIR}$install_library_dir/OLD_$config_progname" ; fi
+ -\$(COPY) ../$config_arch/$config_progname "\${DESTDIR}$install_library_dir"
if [ -d "../lib/redistrib/lib_$config_arch" ]; then \\
\$(CD) ../lib/redistrib/lib_$config_arch; \$(TAR) -cf - ./* | \\
- (cd "$install_library_dir" ; \$(TAR) -xf -) \\
+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -) \\
fi ;
- -\$(COPY) @vmd_other_exe "$install_library_dir"
+ -\$(COPY) @vmd_other_exe "\${DESTDIR}$install_library_dir"
-\$(CD) ..; \$(TAR) -cf - scripts | \\
- (cd "$install_library_dir" ; \$(TAR) -xf -)
+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
-\$(CD) $vmd_library_dir; \$(TAR) -cf - scripts | \\
- (cd "$install_library_dir" ; \$(TAR) -xf -)
+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
-\$(CD) ..; \$(TAR) -cf - python | \\
- (cd "$install_library_dir"/scripts ; \$(TAR) -xf -)
+ (cd "\${DESTDIR}$install_library_dir"/scripts ; \$(TAR) -xf -)
-\$(CD) ..; \$(TAR) -cf - plugins | \\
- (cd "$install_library_dir" ; \$(TAR) -xf -)
+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
-\$(CD) ..; \$(TAR) -cf - shaders | \\
- (cd "$install_library_dir" ; \$(TAR) -xf -)
- -\$(COPY) ../data/.vmdrc ../data/.vmdsensors ../data/vmd_completion.dat "$install_library_dir"
+ (cd "\${DESTDIR}$install_library_dir" ; \$(TAR) -xf -)
+ -\$(COPY) ../data/.vmdrc ../data/.vmdsensors ../data/vmd_completion.dat "\${DESTDIR}$install_library_dir"
\$(CD) $vmd_bin_dir ; \\
if [ -f run_vmd_tmp ]; then \$(DELETE) run_vmd_tmp; fi ; \\
if [ ! -x "/bin/csh" ]; then \\
@@ -3044,7 +3044,7 @@
cat $vmd_bin_csh >> run_vmd_tmp ; \\
fi ; \\
chmod +x run_vmd_tmp ; \\
- \$(COPY) run_vmd_tmp "$install_bin_dir"/$install_name ; \\
+ \$(COPY) run_vmd_tmp "\${DESTDIR}$install_bin_dir"/$install_name ; \\
\$(DELETE) run_vmd_tmp
\$(ECHO) Make sure "$install_bin_dir"/$install_name is in your path.
\$(ECHO) "VMD installation complete. Enjoy!"

6
science/vmd/files/patch-lib_tachyon_unix_Make-arch
View File

@ -1,6 +1,6 @@
--- Make-arch-orig Fri Mar 25 14:34:38 2005
+++ lib/tachyon/unix/Make-arch Fri Mar 25 14:34:50 2005
@@ -989,7 +989,7 @@
--- lib/tachyon/unix/Make-arch.orig 2013-04-21 19:09:28 UTC
+++ lib/tachyon/unix/Make-arch
@@ -1103,7 +1103,7 @@ bsd:
$(MAKE) all \
"ARCH = bsd" \
"CC = gcc" \

784
science/vmd/pkg-plist
View File

@ -5,7 +5,7 @@ lib/vmd/Announcement
lib/vmd/LICENSE
lib/vmd/README
lib/vmd/doc/ug.pdf
lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd4.0/catdcd
lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd5.1/catdcd
lib/vmd/plugins/%%VMD_ARCH%%/bin/cionize1.0/cionize
lib/vmd/plugins/%%VMD_ARCH%%/molfile/abinitplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/avsplugin.so
@ -42,6 +42,7 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/mapplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/mdfplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/mol2plugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/moldenplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/molemeshplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/msmsplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/namdbinplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/offplugin.so
@ -49,8 +50,10 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/parm7plugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/parmplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/pbeqplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/pdbplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/pdbxplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/phiplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/pltplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/plyplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/pqrplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/psfplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/raster3dplugin.so
@ -60,6 +63,7 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/spiderplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/stlplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/tinkerplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/uhbdplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vasp5xdatcarplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspchgcarplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspoutcarplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspparchgplugin.so
@ -67,77 +71,66 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspposcarplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspxdatcarplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspxmlplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vtfplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/vtkplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/webpdbplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/xbgfplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/xsfplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/molfile/xyzplugin.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.3/psfcheck.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.3/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.3/autopsf.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/cionize1.0/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.6/autopsf.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.6/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/autopsf1.6/psfcheck.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/bossconvert1.0/Topology
lib/vmd/plugins/%%VMD_ARCH%%/tcl/bossconvert1.0/bossconvert.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/bossconvert1.0/imprlist
lib/vmd/plugins/%%VMD_ARCH%%/tcl/bossconvert1.0/oplsaa.par
lib/vmd/plugins/%%VMD_ARCH%%/tcl/bossconvert1.0/oplsaa.sb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/bossconvert1.0/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/cionize1.0/cionize.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/cionize1.0/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/clustalw
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/clustalw_help
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/clustalw.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/mafft.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/clustalw_help
lib/vmd/plugins/%%VMD_ARCH%%/tcl/clustalw1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0/hesstrans.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/q
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/metric.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/libbiokit_profcombine.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/libbiokit_entropy.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/libbiokit.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/seqqr
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/structqr
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/libbiokit_entropy.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/libbiokit_profcombine.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/metric.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/percid
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/q
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/qpair
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/rmsd
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/percid
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/seqqr
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/structqr
lib/vmd/plugins/%%VMD_ARCH%%/tcl/libbiokit1.1/tcl_libbiokit.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.4/libalchemify.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.4/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.4/mutator_gui.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.4/mutator.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/upgmaclu
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_widget.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_nodeprops.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_nexus.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_newick.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_matrixviewer.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_je.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_export.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_data.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_analysis.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mafft1.1/mafft.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mafft1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.5/libalchemify.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.5/mutator.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.5/mutator_gui.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/mutator1.5/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/cluster.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_analysis.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_data.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_export.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_je.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_matrixviewer.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_newick.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_nexus.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_nodeprops.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/phylotree_widget.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/phylotree1.2/upgmaclu
lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/libpmepot.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pmepot.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pmepot_gui.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.6/libpsfgen.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.6/ug.pdf
lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.6/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/specden.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/signalproc.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/fftpack.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/data_io_lib.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/fftcmds.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/sgsmooth.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/stamp
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/stamp.defaults
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/pdb.directories
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/dssp.directories
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/stamp.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/rnaview
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/rnaview.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS/Root
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS/Repository
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS/Entries
lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.6/ug.pdf
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_A.pdb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_C.pdb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_G.pdb
@ -145,16 +138,39 @@ lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_I.pdb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_P.pdb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_T.pdb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/Atomic_U.pdb
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS/Entries
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS/Repository
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/CVS/Root
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/misc_rna.par
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/ps_image.par
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/raster3d.par
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/BASEPARS/vrml_image.par
lib/vmd/plugins/%%VMD_ARCH%%/tcl/volutil1.3/volutil
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/rnaview
lib/vmd/plugins/%%VMD_ARCH%%/tcl/rnaview1.1/rnaview.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/data_io_lib.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/fftcmds.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/fftpack.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/sgsmooth.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/signalproc.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/signalproc1.1/specden.so
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/dssp.directories
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/pdb.directories
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/stamp
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/stamp.defaults
lib/vmd/plugins/%%VMD_ARCH%%/tcl/stamp1.2/stamp.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/volutil1.3/pkgIndex.tcl
lib/vmd/plugins/%%VMD_ARCH%%/tcl/volutil1.3/volutil
lib/vmd/plugins/%%VMD_ARCH%%/tcl/volutil1.3/volutil.tcl
lib/vmd/plugins/include/molfile_plugin.h
lib/vmd/plugins/include/vmdconio.h
lib/vmd/plugins/include/vmdplugin.h
lib/vmd/plugins/noarch/tcl/alascanfep1.0/alascan.tcl
lib/vmd/plugins/noarch/tcl/alascanfep1.0/alascan_analysis.tcl
lib/vmd/plugins/noarch/tcl/alascanfep1.0/fep.tcl
lib/vmd/plugins/noarch/tcl/alascanfep1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/apbsrun1.3/apbsrun.tcl
lib/vmd/plugins/noarch/tcl/apbsrun1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/apbsrun1.3/radii.dat
@ -168,9 +184,38 @@ lib/vmd/plugins/noarch/tcl/autoimd1.7/autoimd.tcl
lib/vmd/plugins/noarch/tcl/autoimd1.7/namdrun.tcl
lib/vmd/plugins/noarch/tcl/autoimd1.7/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/autoimd1.7/ug.pdf
lib/vmd/plugins/noarch/tcl/autoionize1.3/autoionize.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.3/autoionizegui.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.4/autoionize.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.4/autoionizegui.tcl
lib/vmd/plugins/noarch/tcl/autoionize1.4/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/bdtk1.0/bdtk.tcl
lib/vmd/plugins/noarch/tcl/bdtk1.0/bdtk_gui.tcl
lib/vmd/plugins/noarch/tcl/bdtk1.0/bdtk_procs.tcl
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/CVS/Entries
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/CVS/Repository
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/CVS/Root
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/interactions.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/ions.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/membrane.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/CVS/Entries
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/CVS/Repository
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/CVS/Root
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/extend114_chl-chl.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/extend114_pot-chl.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/extend114_pot-pot.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/graphene_cla.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/potentials/graphene_pot.dat
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/CVS/Entries
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/CVS/Repository
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/CVS/Root
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/shape1.gif
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/shape1.shp
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/shape2.gif
lib/vmd/plugins/noarch/tcl/bdtk1.0/database/shapes/shape2.shp
lib/vmd/plugins/noarch/tcl/bdtk1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/bendix1.1/GUI-tips.gif
lib/vmd/plugins/noarch/tcl/bendix1.1/Monsieur_Bendix_smaller_still.gif
lib/vmd/plugins/noarch/tcl/bendix1.1/bendix.tcl
lib/vmd/plugins/noarch/tcl/bendix1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/bignum1.0/bignum.tcl
lib/vmd/plugins/noarch/tcl/bignum1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/biocore1.1/biocore.tcl
@ -182,29 +227,29 @@ lib/vmd/plugins/noarch/tcl/biocore1.1/biocoreutil.tcl
lib/vmd/plugins/noarch/tcl/biocore1.1/locked.gif
lib/vmd/plugins/noarch/tcl/biocore1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/biocore1.1/unlocked.gif
lib/vmd/plugins/noarch/tcl/blast1.1/blast.tcl
lib/vmd/plugins/noarch/tcl/blast1.1/blast_resultviewer.tcl
lib/vmd/plugins/noarch/tcl/blast1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.0/cggui.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.0/cgnetworking.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.0/cgtools.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.0/protein.cgc
lib/vmd/plugins/noarch/tcl/cgtools1.0/rbcg-2007.par
lib/vmd/plugins/noarch/tcl/cgtools1.0/rbcg-2007.top
lib/vmd/plugins/noarch/tcl/cgtools1.0/water.cgc
lib/vmd/plugins/noarch/tcl/chirality1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/chirality1.1/chirality_gui.tcl
lib/vmd/plugins/noarch/tcl/chirality1.1/chirality.tcl
lib/vmd/plugins/noarch/tcl/cispeptide1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cispeptide1.1/cispeptide_gui.tcl
lib/vmd/plugins/noarch/tcl/cispeptide1.1/cispeptide.tcl
lib/vmd/plugins/noarch/tcl/blast1.11/blast.tcl
lib/vmd/plugins/noarch/tcl/blast1.11/blast_resultviewer.tcl
lib/vmd/plugins/noarch/tcl/blast1.11/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.2/cggui.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.2/cgnetworking.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.2/cgtools.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cgtools1.2/protein.cgc
lib/vmd/plugins/noarch/tcl/cgtools1.2/rbcg-2007.par
lib/vmd/plugins/noarch/tcl/cgtools1.2/rbcg-2007.top
lib/vmd/plugins/noarch/tcl/cgtools1.2/water.cgc
lib/vmd/plugins/noarch/tcl/chirality1.2/chirality.tcl
lib/vmd/plugins/noarch/tcl/chirality1.2/chirality_gui.tcl
lib/vmd/plugins/noarch/tcl/chirality1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cispeptide1.3/cispeptide.tcl
lib/vmd/plugins/noarch/tcl/cispeptide1.3/cispeptide_gui.tcl
lib/vmd/plugins/noarch/tcl/cispeptide1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/cliptool1.0/cliptool.tcl
lib/vmd/plugins/noarch/tcl/cliptool1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/clonerep1.2/clonerep.tcl
lib/vmd/plugins/noarch/tcl/clonerep1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/colorscalebar1.3/colorscalebar.tcl
lib/vmd/plugins/noarch/tcl/colorscalebar1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/clonerep1.3/clonerep.tcl
lib/vmd/plugins/noarch/tcl/clonerep1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/colorscalebar1.4/colorscalebar.tcl
lib/vmd/plugins/noarch/tcl/colorscalebar1.4/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/contactmap1.1/contactmap.tcl
lib/vmd/plugins/noarch/tcl/contactmap1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/dataimport1.0/dataimport.tcl
@ -221,40 +266,41 @@ lib/vmd/plugins/noarch/tcl/exectool1.2/jobmanager.tcl
lib/vmd/plugins/noarch/tcl/exectool1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/extendedpdb1.0/extendedpdb.tcl
lib/vmd/plugins/noarch/tcl/extendedpdb1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_guiProcs.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_guiInterface.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_GeomOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_GenZMatrix.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_GenDihScan.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_GenBonded.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_DihOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_ChargeOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_BuildPar.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_BondAngleOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk.tcl
lib/vmd/plugins/noarch/tcl/fftk1.0/fftk_SharedFcns.tcl
lib/vmd/plugins/noarch/tcl/gofrgui1.2/gofrgui.tcl
lib/vmd/plugins/noarch/tcl/gofrgui1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_BondAngleOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_BuildPar.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_ChargeOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_DihOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_GenBonded.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_GenDihScan.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_GenZMatrix.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_GeomOpt.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_SharedFcns.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_distort.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_guiInterface.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/fftk_guiProcs.tcl
lib/vmd/plugins/noarch/tcl/fftk1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/gofrgui1.3/gofrgui.tcl
lib/vmd/plugins/noarch/tcl/gofrgui1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/hbonds1.2/hbonds.tcl
lib/vmd/plugins/noarch/tcl/hbonds1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/heatmapper1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/heatmapper1.0/heatmapper.tcl
lib/vmd/plugins/noarch/tcl/heatmapper1.1/heatmapper.tcl
lib/vmd/plugins/noarch/tcl/heatmapper1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/idatm0.1/idatm.tcl
lib/vmd/plugins/noarch/tcl/idatm0.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/ilstools1.4/acetylene.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/carbondioxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/carbonmonoxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/ethene.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/hydrogen.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/ilstools.tcl
lib/vmd/plugins/noarch/tcl/ilstools1.4/methane.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/nitricoxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/nitrogen.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/nitrogendioxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/nitrousoxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/oxygen.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.4/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/ilstools1.5/acetylene.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/carbondioxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/carbonmonoxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/ethene.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/hydrogen.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/ilstools.tcl
lib/vmd/plugins/noarch/tcl/ilstools1.5/methane.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/nitricoxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/nitrogen.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/nitrogendioxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/nitrousoxide.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/oxygen.xyz
lib/vmd/plugins/noarch/tcl/ilstools1.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/imdmenu1.0/imdmenu.tcl
lib/vmd/plugins/noarch/tcl/imdmenu1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/inorganicbuilder.tcl
@ -279,147 +325,150 @@ lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/sio2.inp
lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/sio2.pdb
lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/sio2.top
lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/pkgIndex.tcl
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lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/fragments/vinyl.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/A.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/C.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/CVS/Entries
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/CVS/Repository
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/CVS/Root
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/G.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/T.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/U.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/dna_backbone.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/dna_dihedrals.gif
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/rna_backbone.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/lib/nucleic_acids/rna_backbone_added.mfrag
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture_builder.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture_edit.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture_geometry.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture_gui.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture_internals.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/molefacture_state.tcl
lib/vmd/plugins/noarch/tcl/molefacture1.4/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/moltoptools0.1/moltoptools.tcl
lib/vmd/plugins/noarch/tcl/moltoptools0.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/multimolanim1.0/multimolanim.tcl
lib/vmd/plugins/noarch/tcl/multimolanim1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/multiplot1.6/multiplot.tcl
lib/vmd/plugins/noarch/tcl/multiplot1.6/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/multiplot1.7/multiplot.tcl
lib/vmd/plugins/noarch/tcl/multiplot1.7/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/multiseq2.1/colormap_vmd.tcl
lib/vmd/plugins/noarch/tcl/multiseq2.1/export_options.tcl
lib/vmd/plugins/noarch/tcl/multiseq2.1/find.tcl
@ -440,36 +489,36 @@ lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/multiseqdialog.tcl
lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/scrolledframe.tcl
lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/wait_dialog.tcl
lib/vmd/plugins/noarch/tcl/multitext1.0/multitext.tcl
lib/vmd/plugins/noarch/tcl/multitext1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/multitext1.1/multitext.tcl
lib/vmd/plugins/noarch/tcl/multitext1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/namdenergy1.4/namdenergy.tcl
lib/vmd/plugins/noarch/tcl/namdenergy1.4/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/namdgui1.3/namdgui.tcl
lib/vmd/plugins/noarch/tcl/namdgui1.3/namdgui_tclforces.tcl
lib/vmd/plugins/noarch/tcl/namdgui1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/namdplot1.1/namdplot.tcl
lib/vmd/plugins/noarch/tcl/namdplot1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/namdplot1.2/namdplot.tcl
lib/vmd/plugins/noarch/tcl/namdplot1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/namdserver1.1/namdserver.tcl
lib/vmd/plugins/noarch/tcl/namdserver1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.2/nanotube.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.2/graphene.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.2/gui.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.5/graphene.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.5/gui.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.5/nanotube.tcl
lib/vmd/plugins/noarch/tcl/nanotube1.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/navfly1.0/navfly.tcl
lib/vmd/plugins/noarch/tcl/navfly1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/navigate1.0/navigate.tcl
lib/vmd/plugins/noarch/tcl/navigate1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/suboptimalPaths.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/adjacencyMatrix.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/networkSetup.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/communityNetwork.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/networkViewGui.tcl
lib/vmd/plugins/noarch/tcl/networkview1.0/networkView.tcl
lib/vmd/plugins/noarch/tcl/nmwiz1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/nmwiz1.0/nmwiz.tcl
lib/vmd/plugins/noarch/tcl/optimization1.1/optimization.tcl
lib/vmd/plugins/noarch/tcl/optimization1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/adjacencyMatrix.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/communityNetwork.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/networkSetup.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/networkView.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/networkViewGui.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/networkview1.41/suboptimalPaths.tcl
lib/vmd/plugins/noarch/tcl/nmwiz1.2/nmwiz.tcl
lib/vmd/plugins/noarch/tcl/nmwiz1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/optimization1.3/optimization.tcl
lib/vmd/plugins/noarch/tcl/optimization1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/palettetool1.0/palettetool.tcl
lib/vmd/plugins/noarch/tcl/palettetool1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/paratool1.5/paratool.tcl
@ -489,20 +538,23 @@ lib/vmd/plugins/noarch/tcl/paratool1.5/paratool_respcharges.tcl
lib/vmd/plugins/noarch/tcl/paratool1.5/paratool_tmcomplex.tcl
lib/vmd/plugins/noarch/tcl/paratool1.5/paratool_topology.tcl
lib/vmd/plugins/noarch/tcl/paratool1.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/parsefep1.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/parsefep1.5/parseFEP.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbcbox.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbcgui.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbcjoin.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbcset.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbctools.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbcunwrap.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pbcwrap.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.6/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/parsefep1.9/parseFEP.tcl
lib/vmd/plugins/noarch/tcl/parsefep1.9/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbcbox.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbcgui.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbcjoin.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbcset.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbctools.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbcunwrap.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pbcwrap.tcl
lib/vmd/plugins/noarch/tcl/pbctools2.8/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/pdbtool1.0/pdbtool.tcl
lib/vmd/plugins/noarch/tcl/pdbtool1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/plumed0.9/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/plumed0.9/vmdplumed.tcl
lib/vmd/plugins/noarch/tcl/plumed2.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/plumed2.5/templates_list_v1.tcl
lib/vmd/plugins/noarch/tcl/plumed2.5/templates_list_v2.tcl
lib/vmd/plugins/noarch/tcl/plumed2.5/templates_list_vmdcv.tcl
lib/vmd/plugins/noarch/tcl/plumed2.5/vmdplumed.tcl
lib/vmd/plugins/noarch/tcl/propka1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/propka1.1/propka.tcl
lib/vmd/plugins/noarch/tcl/psipred1.1/pkgIndex.tcl
@ -516,31 +568,57 @@ lib/vmd/plugins/noarch/tcl/qmtool1.3/qmtool_charges.tcl
lib/vmd/plugins/noarch/tcl/qmtool1.3/qmtool_intcoor.tcl
lib/vmd/plugins/noarch/tcl/qmtool1.3/qmtool_readwrite.tcl
lib/vmd/plugins/noarch/tcl/qmtool1.3/qmtool_setup.tcl
lib/vmd/plugins/noarch/tcl/qwikmd1.1/Annealing.conf
lib/vmd/plugins/noarch/tcl/qwikmd1.1/Equilibration.conf
lib/vmd/plugins/noarch/tcl/qwikmd1.1/MD.conf
lib/vmd/plugins/noarch/tcl/qwikmd1.1/Minimization.conf
lib/vmd/plugins/noarch/tcl/qwikmd1.1/SMD.conf
lib/vmd/plugins/noarch/tcl/qwikmd1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/qwikmd1.1/qwikmd.tcl
lib/vmd/plugins/noarch/tcl/qwikmd1.1/qwikmd_ballon.tcl
lib/vmd/plugins/noarch/tcl/qwikmd1.1/qwikmd_func.tcl
lib/vmd/plugins/noarch/tcl/qwikmd1.1/qwikmd_info.tcl
lib/vmd/plugins/noarch/tcl/qwikmd1.1/qwikmd_logText.tcl
lib/vmd/plugins/noarch/tcl/ramaplot1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/ramaplot1.1/ramaplot.tcl
lib/vmd/plugins/noarch/tcl/readcharmmpar1.2/par_all27_prot_lipid_na.inp
lib/vmd/plugins/noarch/tcl/readcharmmpar1.2/par_all36_lipid.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.2/par_amber2charmm.inp
lib/vmd/plugins/noarch/tcl/readcharmmpar1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/readcharmmpar1.2/readcharmmpar.tcl
lib/vmd/plugins/noarch/tcl/readcharmmtop1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/readcharmmtop1.1/readcharmmtop.tcl
lib/vmd/plugins/noarch/tcl/readcharmmtop1.1/top_all27_hybrid.inp
lib/vmd/plugins/noarch/tcl/readcharmmtop1.1/top_all27_prot_lipid_na.inp
lib/vmd/plugins/noarch/tcl/readcharmmtop1.1/top_all36_lipid.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.1/top_amber2charmm.inp
lib/vmd/plugins/noarch/tcl/remote0.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/remote0.1/remote.tcl
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all22_prot.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all27_prot_lipid_na.inp
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all36_carb.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all36_cgenff.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all36_lipid.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all36_na.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_all36_prot.prm
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/par_amber2charmm.inp
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/readcharmmpar.tcl
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/toppar_all36_carb_glycopeptide.str
lib/vmd/plugins/noarch/tcl/readcharmmpar1.3/toppar_water_ions_namd.str
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/readcharmmtop.tcl
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all22_prot.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all27_hybrid.inp
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all27_prot_lipid_na.inp
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all36_carb.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all36_cgenff.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all36_hybrid.inp
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all36_lipid.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all36_na.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_all36_prot.rtf
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/top_amber2charmm.inp
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/toppar_all36_carb_glycopeptide.str
lib/vmd/plugins/noarch/tcl/readcharmmtop1.2/toppar_water_ions_namd.str
lib/vmd/plugins/noarch/tcl/remote0.6/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/remote0.6/remote.tcl
lib/vmd/plugins/noarch/tcl/resptool1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/resptool1.2/resptool.tcl
lib/vmd/plugins/noarch/tcl/rmsd1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/rmsd1.0/rmsd.tcl
lib/vmd/plugins/noarch/tcl/rmsdtt3.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/rmsdtt3.0/rmsdtt.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/rmsdvt.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/rmsdvt-gui.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/modal.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/rmsdvt-gui.tcl
lib/vmd/plugins/noarch/tcl/rmsdvt1.0/rmsdvt.tcl
lib/vmd/plugins/noarch/tcl/ruler1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/ruler1.0/ruler.tcl
lib/vmd/plugins/noarch/tcl/runante0.2/pkgIndex.tcl
@ -608,36 +686,75 @@ lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget_edit.tcl
lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget_select.tcl
lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget_statusbar.tcl
lib/vmd/plugins/noarch/tcl/seqedit1.1/taxonomy_options.tcl
lib/vmd/plugins/noarch/tcl/solvate1.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/solvate1.5/solvate.tcl
lib/vmd/plugins/noarch/tcl/solvate1.5/wat.pdb
lib/vmd/plugins/noarch/tcl/solvate1.5/wat.psf
lib/vmd/plugins/noarch/tcl/solvate1.5/wat.top
lib/vmd/plugins/noarch/tcl/solvate1.7/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/solvate1.7/solvate.tcl
lib/vmd/plugins/noarch/tcl/solvate1.7/wat.pdb
lib/vmd/plugins/noarch/tcl/solvate1.7/wat.psf
lib/vmd/plugins/noarch/tcl/solvate1.7/wat.top
lib/vmd/plugins/noarch/tcl/ssrestraints1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/ssrestraints1.1/ssrestraints.tcl
lib/vmd/plugins/noarch/tcl/ssrestraints1.1/ssrestraints_stride.tcl
lib/vmd/plugins/noarch/tcl/stingtool1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/stingtool1.0/stingtool.tcl
lib/vmd/plugins/noarch/tcl/structurecheck1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/structurecheck1.1/structurecheck.tcl
lib/vmd/plugins/noarch/tcl/symmetrytool1.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/symmetrytool1.3/symmetry.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/CHANGES.txt
lib/vmd/plugins/noarch/tcl/tablelist5.13/COPYRIGHT.txt
lib/vmd/plugins/noarch/tcl/tablelist5.13/README.txt
lib/vmd/plugins/noarch/tcl/tablelist5.13/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/mwutil.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/pencil.cur
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/repair.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistBind.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistConfig.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistEdit.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistImages.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistMove.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistSort.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistThemes.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistUtil.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tablelistWidget.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/scripts/tclIndex
lib/vmd/plugins/noarch/tcl/tablelist5.13/tablelist.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/tablelistPublic.tcl
lib/vmd/plugins/noarch/tcl/tablelist5.13/tablelist_tile.tcl
lib/vmd/plugins/noarch/tcl/timeline2.3/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/timeline2.3/timeline.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/README
lib/vmd/plugins/noarch/tcl/topotools1.2/par_CG.prm
lib/vmd/plugins/noarch/tcl/topotools1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/top_CG.prm
lib/vmd/plugins/noarch/tcl/topotools1.2/topoangles.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topoatoms.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topobonds.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topocgcmm.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topodihedrals.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topogromacs.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topohelpers.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topoimpropers.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topolammps.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topotools.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topoutils.tcl
lib/vmd/plugins/noarch/tcl/topotools1.2/topovarxyz.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/README
lib/vmd/plugins/noarch/tcl/topotools1.7/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topoangles.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topoatoms.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topobonds.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topocrossterms.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topodihedrals.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topogromacs.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topohelpers.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topoimpropers.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topolammps.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topotools.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topoutils.tcl
lib/vmd/plugins/noarch/tcl/topotools1.7/topovarxyz.tcl
lib/vmd/plugins/noarch/tcl/torsionplot1.1/AMAN_12_AMAN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/AMAN_12_BGLN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/AMAN_14_BGLN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/AMAN_16_AMAN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/BGLN_14_BMAN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/BGLN_16_AFUC.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/BGLN_or_AMAN_14_BGLN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/BMAN_16_AMAN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/MAN_13_AMAN.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/NGLB_FUC.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/NGLB_no_FUC.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/torsionplot1.1/rama-cispro.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/rama-general.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/rama-gly.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/rama-ileval.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/rama-prepro-noGP.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/rama-transpro.dx
lib/vmd/plugins/noarch/tcl/torsionplot1.1/torsionplot.tcl
lib/vmd/plugins/noarch/tcl/trunctraj1.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/acepar19.inp
lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/acepar22_prot.inp
@ -692,20 +809,41 @@ lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all30_cheq_prot.inp
lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/toph19.inp
lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/toprna10r_22.inp
lib/vmd/plugins/noarch/tcl/trunctraj1.5/trunctraj.tcl
lib/vmd/plugins/noarch/tcl/utilities1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/utilities1.0/utilities.tcl
lib/vmd/plugins/noarch/tcl/utilities1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/utilities1.2/utilities.tcl
lib/vmd/plugins/noarch/tcl/vdna2.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vdna2.2/vdna.tcl
lib/vmd/plugins/noarch/tcl/viewchangerender1.6/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/viewchangerender1.6/vcr_gui.tcl
lib/vmd/plugins/noarch/tcl/viewchangerender1.6/vcr.tcl
lib/vmd/plugins/noarch/tcl/viewmaster2.5/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/viewmaster2.5/viewmaster.tcl
lib/vmd/plugins/noarch/tcl/vmddebug1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vmddebug1.0/debugatomsel.tcl
lib/vmd/plugins/noarch/tcl/vmddebug1.0/vmddebug.tcl
lib/vmd/plugins/noarch/tcl/viewchangerender1.8/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/viewchangerender1.8/vcr.tcl
lib/vmd/plugins/noarch/tcl/viewchangerender1.8/vcr_gui.tcl
lib/vmd/plugins/noarch/tcl/viewmaster2.6/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/viewmaster2.6/viewmaster.tcl
lib/vmd/plugins/noarch/tcl/vmddebug1.1/debugatomsel.tcl
lib/vmd/plugins/noarch/tcl/vmddebug1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vmddebug1.1/vmddebug.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/centerMolecule.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/1nqg.pdb
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/1ubq.pdb
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/3zoj.pdb
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/6tna.pdb
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/CVS/Entries
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/CVS/Repository
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/CVS/Root
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/bdna.pdb
lib/vmd/plugins/noarch/tcl/vmdlite1.1/sandboxMolecules/membrane.pdb
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmd.rc
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite_analysis.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite_graphics.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite_guiProcs.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite_main.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite_sandbox.tcl
lib/vmd/plugins/noarch/tcl/vmdlite1.1/vmdlite_system.tcl
lib/vmd/plugins/noarch/tcl/vmdmovie1.9/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vmdmovie1.9/vmdmovie.tcl
lib/vmd/plugins/noarch/tcl/vmdprefs1.0/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vmdprefs1.0/vmdprefs.tcl
lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/README
lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/CVS/Entries
@ -740,8 +878,8 @@ lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-modified.tcl
lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/vmdtkcon.tcl
lib/vmd/plugins/noarch/tcl/volmapgui1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/volmapgui1.1/volmapgui.tcl
lib/vmd/plugins/noarch/tcl/zoomseq1.1/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/zoomseq1.1/zoomseq.tcl
lib/vmd/plugins/noarch/tcl/zoomseq1.2/pkgIndex.tcl
lib/vmd/plugins/noarch/tcl/zoomseq1.2/zoomseq.tcl
lib/vmd/scripts/CVS/Entries
lib/vmd/scripts/CVS/Repository
lib/vmd/scripts/CVS/Root
@ -1173,9 +1311,9 @@ lib/vmd/shaders/CVS/Root
lib/vmd/shaders/vmd.frag
lib/vmd/shaders/vmd.vert
lib/vmd/shaders/vmdsphere.frag
lib/vmd/shaders/vmdsphere.vert
lib/vmd/shaders/vmdspheresprite.frag
lib/vmd/shaders/vmdspheresprite.vert
lib/vmd/shaders/vmdsphere.vert
lib/vmd/stride_%%VMD_ARCH%%
lib/vmd/surf_%%VMD_ARCH%%
lib/vmd/tachyon_%%VMD_ARCH%%