SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
protein similarities that plays a key role in many bioinformatics methods. It contains about all currently published protein sequences and is continuously updated. The computational effort for keeping SIMAP up-to-date is constantly increasing. Please help to update SIMAP by calculating protein similarities on your computer. WWW: http://boinc.bio.wzw.tum.de/boincsimap/
This commit is contained in:
parent
9d91a853b8
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Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=165801
@ -11,6 +11,7 @@
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SUBDIR += belvu
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SUBDIR += biojava
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SUBDIR += blast
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SUBDIR += boinc-simap
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SUBDIR += clustalw
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SUBDIR += coalesce
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SUBDIR += blat
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59
biology/boinc-simap/Makefile
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59
biology/boinc-simap/Makefile
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# New ports collection makefile for: boinc-simap
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# Date created: 29 May 2006
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# Whom: Pav Lucistnik <pav@FreeBSD.org>
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# $FreeBSD$
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#
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PORTNAME= boinc-simap
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PORTVERSION= 5.08
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CATEGORIES= biology
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MASTER_SITES= http://boinc.bio.wzw.tum.de/boincsimap/download/
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DISTNAME= simap_${PORTVERSION}_i386-pc-freebsd_dyn
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EXTRACT_SUFX= #
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MAINTAINER= pav@FreeBSD.org
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COMMENT= Similarity Matrix of Proteins project for BOINC
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RUN_DEPENDS= boinc_client:${PORTSDIR}/net/boinc-client
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NO_BUILD= yes
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NO_WRKSUBDIR= yes
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STRIP= #
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# these must match settings in ${PORTSDIR}/net/boinc-client/Makefile
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BOINC_USER?= boinc
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BOINC_GROUP?= nobody
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BOINC_HOME?= /var/db/boinc
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SIMAP_SITE= boinc.bio.wzw.tum.de_boincsimap
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SIMAP_URL= boinc.bio.wzw.tum.de/boincsimap
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SIMAP_BINARY= ${DISTNAME}
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PLIST_SUB= SIMAP_BINARY=${SIMAP_BINARY} SIMAP_SITE=${SIMAP_SITE} \
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BOINC_HOME=${BOINC_HOME}
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SUB_FILES= app_info.xml
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SUB_LIST= DISTNAME=${DISTNAME} APPVERSION=${PORTVERSION:S/.//}
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.include <bsd.port.pre.mk>
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ONLY_FOR_ARCHS= i386 amd64
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.if ${OSVERSION} < 600000
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IGNORE= only supports FreeBSD 6.X and newer
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.endif
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do-extract:
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@${MKDIR} ${WRKDIR}
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@${CP} ${DISTDIR}/${DISTNAME} ${WRKDIR}
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do-install:
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${INSTALL} -d -o ${BOINC_USER} -g ${BOINC_GROUP} ${BOINC_HOME}/projects
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${INSTALL} -d -o ${BOINC_USER} -g ${BOINC_GROUP} ${BOINC_HOME}/projects/${SIMAP_SITE}
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${INSTALL_DATA} -o ${BOINC_USER} -g ${BOINC_GROUP} ${WRKDIR}/app_info.xml ${BOINC_HOME}/projects/${SIMAP_SITE}
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${INSTALL_PROGRAM} -o ${BOINC_USER} -g ${BOINC_GROUP} ${WRKDIR}/${SIMAP_BINARY} ${BOINC_HOME}/projects/${SIMAP_SITE}
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post-install:
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@${CAT} ${PKGMESSAGE}
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.include <bsd.port.post.mk>
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3
biology/boinc-simap/distinfo
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3
biology/boinc-simap/distinfo
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MD5 (simap_5.08_i386-pc-freebsd_dyn) = cfc33759f7132680fc3f1f6e8c03fe1a
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SHA256 (simap_5.08_i386-pc-freebsd_dyn) = 3b7bb8d150b9f41e2ff84c02b6f54008bc90448f19831cd9110e4c2981a36db2
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SIZE (simap_5.08_i386-pc-freebsd_dyn) = 950606
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17
biology/boinc-simap/files/app_info.xml.in
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17
biology/boinc-simap/files/app_info.xml.in
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<app_info>
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<app>
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<name>simap</name>
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</app>
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<file_info>
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<name>%%DISTNAME%%</name>
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<executable/>
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</file_info>
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<app_version>
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<app_name>simap</app_name>
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<version_num>%%APPVERSION%%</version_num>
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<file_ref>
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<file_name>%%DISTNAME%%</file_name>
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<main_program/>
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</file_ref>
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</app_version>
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</app_info>
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10
biology/boinc-simap/pkg-descr
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10
biology/boinc-simap/pkg-descr
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SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculated
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protein similarities that plays a key role in many bioinformatics methods. It
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contains about all currently published protein sequences and is continuously
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updated.
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The computational effort for keeping SIMAP up-to-date is constantly increasing.
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Please help to update SIMAP by calculating protein similarities on your
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computer.
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WWW: http://boinc.bio.wzw.tum.de/boincsimap/
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biology/boinc-simap/pkg-message
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16
biology/boinc-simap/pkg-message
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*****************************************************************************
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ATTACHING PROJECT
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Just run boinc_gui, choose Attach, and follow instructions.
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Project URL is boinc.bio.wzw.tum.de/boincsimap
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MANUAL INSTALLATION
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*) If this is your first time in any BOINC project, create a new account at
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http://boinc.bio.wzw.tum.de/boincsimap/create_account_form.php
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*) Or get your account key at http://boinc.bio.wzw.tum.de/boincsimap/get_passwd.php
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*) Attach to the project:
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cd /var/db/boinc
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boinc_cmd --project_attach boinc.bio.wzw.tum.de/boincsimap <account key>
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*****************************************************************************
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4
biology/boinc-simap/pkg-plist
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4
biology/boinc-simap/pkg-plist
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@cwd %%BOINC_HOME%%
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projects/%%SIMAP_SITE%%/app_info.xml
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projects/%%SIMAP_SITE%%/%%SIMAP_BINARY%%
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@unexec rmdir %D/projects/%%SIMAP_SITE%% 2>/dev/null || true
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