cpet/freebsd-ports
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

biology/bowtie2: Upgrade to 2.4.2

Browse Source 
Minor bug fix release

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2020-11-07 13:47:41 +00:00
parent b279b4a16b
commit 07edabadbe
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=554390
3 changed files with 20 additions and 12 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
biology/bowtie2/Makefile
View File

@ -2,8 +2,7 @@
PORTNAME= bowtie2
DISTVERSIONPREFIX= v
DISTVERSION= 2.4.1
PORTREVISION= 2
DISTVERSION= 2.4.2
CATEGORIES= biology perl5 python
MAINTAINER= jwb@FreeBSD.org

6
biology/bowtie2/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1583075948
SHA256 (BenLangmead-bowtie2-v2.4.1_GH0.tar.gz) = 9fb25513886bf294217dd9c5ca26d18dd5e02e0ae999935ac7ba5700befc492e
SIZE (BenLangmead-bowtie2-v2.4.1_GH0.tar.gz) = 10588621
TIMESTAMP = 1604617529
SHA256 (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = ea33a1562faf759b21b3a905e20b87a3524ac4e53af8cd723d9a9f31ee159c8a
SIZE (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = 10590144

23
biology/bowtie2/files/patch-Makefile
View File

@ -1,6 +1,15 @@
--- Makefile.orig 2020-03-01 15:16:08 UTC
--- Makefile.orig 2020-11-05 23:04:50 UTC
+++ Makefile
@@ -200,22 +200,22 @@ endif
@@ -24,7 +24,7 @@
PREFIX := /usr/local
bindir := $(PREFIX)/bin
-ARCH := $(shell uname -m)
+ARCH := $(shell uname -p)
LDLIBS := -lz
GCC_PREFIX := $(shell dirname `which gcc`)
GCC_SUFFIX :=
@@ -201,22 +201,22 @@ endif
BITS := 32
SSE_FLAG := -msse2
@ -14,17 +23,17 @@
+else ifeq (aarch64,$(shell uname -p))
BITS := 64
SSE_FLAG :=
CXXFLAGS := -fopenmp-simd
CPPFLAGS := -Ithird_party/simde
CXXFLAGS += -fopenmp-simd
CPPFLAGS += -Ithird_party/simde
-else ifeq (s390x,$(shell uname -m))
+else ifeq (s390x,$(shell uname -p))
BITS := 64
SSE_FLAG :=
CXXFLAGS := -fopenmp-simd
CPPFLAGS := -Ithird_party/simde
CXXFLAGS += -fopenmp-simd
CPPFLAGS += -Ithird_party/simde
SANITIZER_FLAGS :=
-else ifeq (ppc64le,$(shell uname -m))
+else ifeq (ppc64le,$(shell uname -p))
BITS := 64
SSE_FLAG :=
CXXFLAGS := -fopenmp-simd
CXXFLAGS += -fopenmp-simd