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biology/stacks: Upgrade to 2.4

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Improve check to avoid outdated GCC on 2nd tier platforms

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2019-05-10 21:04:43 +00:00
parent e115a388e6
commit 047a903a15
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=501199
3 changed files with 6 additions and 52 deletions
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5
biology/stacks/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= stacks
DISTVERSION= 2.3
DISTVERSION= 2.4
CATEGORIES= biology perl5 python
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/
@ -21,7 +21,8 @@ LDFLAGS+= -lpthread
.include <bsd.port.pre.mk>
.if ${ARCH} != amd64 && ${ARCH} != i386
# Force newer GCC on platforms using GCC 4.2 as base
.if ${CHOSEN_COMPILER_TYPE} == gcc
USE_GCC= yes
.endif

6
biology/stacks/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1547306940
SHA256 (stacks-2.3.tar.gz) = 2a5befaf11ca2f191afcd42a3a3392290d6a116d7fe737b69a2c4d5b77f40c99
SIZE (stacks-2.3.tar.gz) = 10962586
TIMESTAMP = 1557519159
SHA256 (stacks-2.4.tar.gz) = 30093d688a2dc62a19ea42a58065f024c8279419439049bcde186703e75641c1
SIZE (stacks-2.4.tar.gz) = 10930616

47
biology/stacks/pkg-plist
View File

@ -16,50 +16,3 @@ bin/stacks-gdb
bin/stacks-integrate-alignments
bin/tsv2bam
bin/ustacks
%%DATADIR%%/php/CatalogClass.php
%%DATADIR%%/php/Locus.php
%%DATADIR%%/php/ajax.js
%%DATADIR%%/php/annotate.js
%%DATADIR%%/php/annotate_marker.php
%%DATADIR%%/php/catalog.php
%%DATADIR%%/php/catalog_genotypes.php
%%DATADIR%%/php/constants.php.dist
%%DATADIR%%/php/correct_genotype.php
%%DATADIR%%/php/correct_genotypes.php
%%DATADIR%%/php/db_functions.php
%%DATADIR%%/php/export.js
%%DATADIR%%/php/export_batch.php
%%DATADIR%%/php/fst_view.php
%%DATADIR%%/php/hapstat_view.php
%%DATADIR%%/php/header.php
%%DATADIR%%/php/images/caret-d.png
%%DATADIR%%/php/images/caret-u.png
%%DATADIR%%/php/images/excel_icon.png
%%DATADIR%%/php/images/l-arrow-disabled.png
%%DATADIR%%/php/images/l-arrow.png
%%DATADIR%%/php/images/r-arrow-disabled.png
%%DATADIR%%/php/images/r-arrow.png
%%DATADIR%%/php/images/stacks_bg.png
%%DATADIR%%/php/images/stacks_logo_rev_small.png
%%DATADIR%%/php/index.php
%%DATADIR%%/php/last_modified.php
%%DATADIR%%/php/phist_view.php
%%DATADIR%%/php/pop_view.php
%%DATADIR%%/php/population_view.js
%%DATADIR%%/php/samples.php
%%DATADIR%%/php/sequence_blast.php
%%DATADIR%%/php/stack_view.php
%%DATADIR%%/php/stacks.css
%%DATADIR%%/php/stacks.js
%%DATADIR%%/php/stacks_functions.php
%%DATADIR%%/php/sumstat_view.php
%%DATADIR%%/php/tag.php
%%DATADIR%%/php/tags.php
%%DATADIR%%/php/version.php
%%DATADIR%%/php/view_sequence.php
%%DATADIR%%/sql/catalog_index.sql
%%DATADIR%%/sql/chr_index.sql
%%DATADIR%%/sql/mysql.cnf.dist
%%DATADIR%%/sql/stacks.sql
%%DATADIR%%/sql/tag_index.sql
@dir %%DATADIR%%/php/export