From b4a22ccaaadb0934e4a44aeb25609d8abdac998b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 14 Dec 2019 16:37:36 +0100 Subject: [PATCH] gnu: Add r-multidataset. * gnu/packages/bioconductor.scm (r-multidataset): New variable. --- gnu/packages/bioconductor.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index dd52f66918..894a150624 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5044,6 +5044,41 @@ conditions. A Bayesian network is used to model the regulatory structure and Markov-Chain-Monte-Carlo is applied to sample the activity states.") (license license:gpl2+))) +(define-public r-multidataset + (package + (name "r-multidataset") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MultiDataSet" version)) + (sha256 + (base32 + "0iw99ymrv3ls023mpmgyagmb5simgsgadpj0k4bnssfaqnklywlj")))) + (properties `((upstream-name . "MultiDataSet"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-iranges" ,r-iranges) + ("r-limma" ,r-limma) + ("r-qqman" ,r-qqman) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://bioconductor.org/packages/MultiDataSet/") + (synopsis "Implementation of MultiDataSet and ResultSet") + (description + "This package provides an implementation of the BRGE's (Bioinformatic +Research Group in Epidemiology from Center for Research in Environmental +Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for +integrating multi omics data sets and ResultSet is a container for omics +results. This package contains base classes for MEAL and rexposome +packages.") + (license license:expat))) + (define-public r-ropls (package (name "r-ropls")