From 60abbbf8c5c03f57364c0a0a6af3685cc8660772 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= Date: Sat, 27 Nov 2021 10:46:01 +0100 Subject: [PATCH] gnu: Add r-xmapbridge. * gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 80c264dfcd..cdaf97d921 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4731,6 +4731,33 @@ protein-protein interaction databases and integrative resources such as molecular functions, respectively, and produces intuitive graphical outputs.") (license license:gpl3))) +(define-public r-xmapbridge + (package + (name "r-xmapbridge") + (version "1.52.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "xmapbridge" version)) + (sha256 + (base32 "1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi")))) + (properties `((upstream-name . "xmapbridge"))) + (build-system r-build-system) + (home-page "https://git.bioconductor.org/packages/xmapbridge") + (synopsis "Display numeric data in the web based genome browser X:MAP") + (description + "The package @code{xmapbridge} can plot graphs in the X:Map genome +browser. X:Map uses the Google Maps API to provide a scrollable view of the +genome. It supports a number of species, and can be accessed at +@url{http://xmap.picr.man.ac.uk}. This package exports plotting files in a +suitable format. Graph plotting in R is done using calls to the functions +@code{xmap.plot} and @code{xmap.points}, which have parameters that aim to be +similar to those used by the standard plot methods in R. These result in data +being written to a set of files (in a specific directory structure) that +contain the data to be displayed, as well as some additional meta-data +describing each of the graphs.") + (license license:lgpl3))) + (define-public r-xvector (package (name "r-xvector")