From 0e09e8ab1554a7dffd60101cb4e631b348e43c9c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= Date: Thu, 4 May 2023 17:46:40 +0200 Subject: [PATCH] gnu: Add r-multibac. * gnu/packages/bioconductor.scm (r-multibac): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 768b55b25e..72bf40cc41 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10101,6 +10101,36 @@ processing to visualization and annotation.") large datasets, including support for on-disk data representation.") (license license:expat))) +(define-public r-multibac + (package + (name "r-multibac") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MultiBaC" version)) + (sha256 + (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i")))) + (properties `((upstream-name . "MultiBaC"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-matrix + r-multiassayexperiment + r-pcamethods + r-plotrix + r-ropls)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/MultiBaC") + (synopsis "Multiomic batch effect correction") + (description + "MultiBaC is a strategy to correct batch effects from multiomic datasets +distributed across different labs or data acquisition events. MultiBaC is +able to remove batch effects across different omics generated within separate +batches provided that at least one common omic data type is included in all +the batches considered.") + (license license:gpl3))) + (define-public r-multtest (package (name "r-multtest")