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Author SHA1 Message Date
cwen
c6d6e88320 Import biology/p5-Bio-DB-EMBL 
This module allows the dynamic retrieval of sequence objects
Bio::Seq from the EMBL database using the dbfetch script at EBI:
https://www.ebi.ac.uk/Tools/dbfetch/dbfetch

@conflict tweak from sthen
OK afresh1@
 2020-08-25 23:37:52 +00:00
sthen
be6d815e35 update to unifi-6.0.15 2020-08-25 19:24:21 +00:00
sthen
96be6bf573 update to unifi-5.14.23 2020-08-25 19:24:13 +00:00
kirby
2cf5c8e11a update to qmapshack-1.15.0 2020-08-25 18:43:54 +00:00
edd
983493caf5 Update to gnupg-2.2.21. 
OK sthen@, thanks!
 2020-08-25 18:20:17 +00:00
edd
6efacb81b4 Update to libksba-1.4.0. 
OK sthen@, thanks!
 2020-08-25 18:19:19 +00:00
ajacoutot
c3d195b227 Missing BDEP on devel/swig. 
spotted by naddy@
 2020-08-25 15:56:51 +00:00
jasper
65ee033949 update to nasm-2.15.04 
tested in a bulk by aja@, thanks!
 2020-08-25 15:01:50 +00:00
landry
dae94c1fb0 Update to nss 3.56, req'd by gecko 81. 
See https://developer.mozilla.org/fr/docs/Mozilla/Projects/NSS/NSS_3.56_release_notes
 2020-08-25 13:43:38 +00:00
visa
7a96b06e17 Fix build on mips64. 
The source code uses identifier `mips' that happens to be one of the
(now legacy) builtin macros defined by the compiler on mips64. Avoid
the conflict by undefining the builtin macro.

OK jca@
 2020-08-25 13:28:19 +00:00
landry
b108e18b48 Update to nspr 4.28 2020-08-25 13:27:41 +00:00
landry
9cb3bb0204 Update to firefox-esr 78.2.0. 
See https://www.mozilla.org/en-US/firefox/78.2.0/releasenotes/
Fixes https://www.mozilla.org/en-US/security/advisories/mfsa2020-38/
 2020-08-25 13:19:49 +00:00
landry
a599828cde remove /usr/local/firefox from unveil.content, this path doesnt exist and is just wrong 2020-08-25 13:19:08 +00:00
landry
6fdd6e5ce6 Update to firefox 80.0. 
See https://www.mozilla.org/en-US/firefox/80.0/releasenotes/
Fixes https://www.mozilla.org/en-US/security/advisories/mfsa2020-36/

- build with ports-clang by default to match the version used by
  rust/cbindgen, fixes weird build issues as noted during the LLVM 10
  upgrade. From semarie@, thanks !
- add patch from #1657321 removing -ffreestanding, allowing to build
  with ports-clang, also from semarie@ and already pushed upstream.
 2020-08-25 13:17:16 +00:00
ajacoutot
de7167fbba Update to libgpg-error-1.39. 2020-08-25 09:01:29 +00:00
remi
153991bc6b Update to librelp 1.6.0 
ok sthen@
 2020-08-25 05:48:54 +00:00
gkoehler
85aad4451a Update to clic-1.1.5 
Committing this for solene@, who did all the work.  The update is
necessary to use clic with ecl-20.4.24.
 2020-08-24 21:41:21 +00:00
gkoehler
223fe0d760 Update to ecl-20.4.24 
From Josh Elsasser; thank you!  I'm adding patch-src_c_package_d (from
Daniel Kochmaski) to work around a SIGSEGV on 64-bit big-endian
platforms, so I can have Common Lisp on powerpc64.  Josh Elsasser
built ecl on mips64 and sparc64.
 2020-08-24 21:38:05 +00:00
gkoehler
9ce43ba11f Patch boehm-gc to avoid sbrk, fix powerpc64, help sparc64. 
Add AO_fetch_compare_and_swap for sparc64, because lang/ecl 20.4.24
will need it.  Thanks to kmos@ for discovering this problem, and to
Josh Elsasser for building this diff on a sparc64.
 2020-08-24 21:31:13 +00:00
bluhm
8f7e3cbca0 Backport fix from upstream. 2020-08-24 21:08:02 +00:00
bluhm
d148bb9fe2 update p5-OPCUA-Open62541 to 0.023 2020-08-24 19:35:33 +00:00
jturner
bac9972de5 Update openradtool to 0.10.0 2020-08-24 17:41:52 +00:00
sthen
17175d7663 update to gpgme-1.14.0 2020-08-24 16:28:30 +00:00
bcallah
7baa517b44 Add mips64 to the NOT_FOR_ARCHS list. MIPS support is incomplete. 
Setting this as to not waste visa@'s time doing bulk builds. We have begun
to fix things, but more work needs to be done and I need to dig out my
octeon machine in order to finish things.
 2020-08-24 15:23:14 +00:00
kmos
7197ba1c4a Add cve quirk for Python 3.7.9 2020-08-24 15:04:29 +00:00
kmos
3c44ed40cd Security update to Python 3.7.9 
Release notes:
https://docs.python.org/release/3.7.9/whatsnew/changelog.html#changelog

ok sthen
 2020-08-24 15:00:29 +00:00
bcallah
b056d75fe6 Use -Oz on i386 to ensure that the linker doesn't run out of memory when 
linking musescore.

From sthen@'s i386 build logs
 2020-08-24 14:29:02 +00:00
rsadowski
4f7220f9b2 Update mlt to 6.22.1 
Drop me as maintainer.

ok tracey@
 2020-08-24 14:09:54 +00:00
jca
b6f376d9cf Unbreak anthy.el with emacs-27.1 
anthy.el was still using old-style backquotes, which trigger warnings
since emacs-22.2 and are finally treated as errors in emacs-27.1.

Failure in bulk builds reported by ajacoutot@
 2020-08-24 13:42:26 +00:00
sthen
4c9d198db9 www/squid: fiddle with LIB_KRB5_LIBS to let it find gssapi 
partly from Matthias Pitzl
 2020-08-24 13:39:00 +00:00
rsadowski
278ec9776e Update lftp to 4.9.2 
OK sthen@
 2020-08-24 10:23:57 +00:00
sthen
12701a5ebb update to darktable 3.2.1, from Asher Pasha with a few tweaks, ok rsadowski 2020-08-24 09:47:06 +00:00
bentley
e62dda9fb4 Update to work-sans-2.010. 
From George Rosamond (maintainer); thanks!
 2020-08-24 09:36:21 +00:00
jsg
3d9a3535ef update to 1.20200811 2020-08-24 08:59:51 +00:00
ajacoutot
e8f2bdf31a Update to gnucash-4.1. 2020-08-24 08:01:49 +00:00
ajacoutot
04c82eb792 Dumb me, fix path to gettext-tools 2020-08-24 06:38:39 +00:00
rsadowski
07032bb7fb Update doxygen to 1.8.19 2020-08-24 06:15:04 +00:00
rsadowski
a8f0361084 Update doxygen-gui to 1.8.19 2020-08-24 06:14:25 +00:00
landry
f4daf49e90 Update to qgis 3.14.15 (Pi) 2020-08-24 06:02:46 +00:00
sthen
2df61a2e26 notmuch: py-cffi used during build, failure reported by naddy 2020-08-23 22:16:02 +00:00
abieber
162e204415 Update luakit to 2.2 
Diff from Stefan Hagen <sh+ports at codevoid dot de> with tweaks from Omar
Polo <op at omarpolo dot com>.
 2020-08-23 22:00:39 +00:00
sthen
40e4178e43 update to perltidy-20200822, from wen heping 2020-08-23 20:54:47 +00:00
kn
a44b70ee3f Unmention -kde, -qt and -qt4 packages from DESCR-main 2020-08-23 20:53:58 +00:00
sthen
a3c4f0feae +p5-Gtk3 2020-08-23 20:46:21 +00:00
sthen
a9d60ae919 import ports/x11/p5-Gtk3, tweak/ok afresh1@ 
Perl interface to the 3.x series of the gtk+ toolkit
 2020-08-23 20:46:19 +00:00
sthen
372e2961d1 update to re2c-2.0.3 2020-08-23 20:42:29 +00:00
sthen
0fa712661f update to squid-4.13 
SQUID-2020:8 HTTP(S) Request Splitting
SQUID-2020:9 Denial of Service processing Cache Digest Response
SQUID-2020:10 HTTP(S) Request Smuggling
 2020-08-23 20:33:57 +00:00
bcallah
56af9583e6 Update to featherpad-0.15.0 
Changelog: https://github.com/tsujan/FeatherPad/releases/tag/V0.15.0
 2020-08-23 19:38:14 +00:00
ajacoutot
e99c633b65 Update to sane-backends-1.0.31. 2020-08-23 15:52:11 +00:00
ajacoutot
5a281b0d99 Add explicit dependency on textproc/gettext-tools. 
This should not be needed because we depend on:
py-distutils-extra -> intltool -> gettext-tools
where this is really used.
But the check for gettext-tools in ports/infrastructure/mk/bsd.port.mk:2650
only checks for direct dependency of the port :-(
 2020-08-23 15:43:07 +00:00