From d5f1ddc420963d1d7ac5e111b27d924568f2e1ba Mon Sep 17 00:00:00 2001 From: sthen Date: Sat, 10 Sep 2022 21:52:11 +0000 Subject: [PATCH] use MODPY_PEP517 --- biology/py-biopython/Makefile | 2 +- .../patches/patch-Tests_run_tests_py | 2 +- biology/py-biopython/pkg/PLIST | 328 +++++++++++++++++- converters/py-html2text/Makefile | 5 +- converters/py-html2text/pkg/PLIST | 22 +- converters/py-num2words/Makefile | 8 +- converters/py-vdf/Makefile | 3 +- converters/py-vdf/pkg/PLIST | 14 +- 8 files changed, 353 insertions(+), 31 deletions(-) diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index 59ea702c9d3..5fd629f2606 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -16,7 +16,7 @@ PERMIT_PACKAGE = Yes MODULES = lang/python MODPY_PI = Yes -MODPY_SETUPTOOLS = Yes +MODPY_PEP517 = setuptools FLAVORS = python3 FLAVOR = python3 diff --git a/biology/py-biopython/patches/patch-Tests_run_tests_py b/biology/py-biopython/patches/patch-Tests_run_tests_py index 5a749925b07..f75319e0449 100644 --- a/biology/py-biopython/patches/patch-Tests_run_tests_py +++ b/biology/py-biopython/patches/patch-Tests_run_tests_py @@ -1,7 +1,7 @@ Index: Tests/run_tests.py --- Tests/run_tests.py.orig +++ Tests/run_tests.py -@@ -150,13 +150,10 @@ def main(argv): +@@ -149,13 +149,10 @@ def main(argv): # A. Because Martel may not be in ../build/lib.* test_path = sys.path[0] or "." source_path = os.path.abspath("%s/.." % test_path) diff --git a/biology/py-biopython/pkg/PLIST b/biology/py-biopython/pkg/PLIST index 82ce4352daa..3e3cab7ec02 100644 --- a/biology/py-biopython/pkg/PLIST +++ b/biology/py-biopython/pkg/PLIST @@ -1,11 +1,11 @@ -lib/python${MODPY_VERSION}/ -lib/python${MODPY_VERSION}/site-packages/ lib/python${MODPY_VERSION}/site-packages/Bio/ lib/python${MODPY_VERSION}/site-packages/Bio/Affy/ lib/python${MODPY_VERSION}/site-packages/Bio/Affy/CelFile.py lib/python${MODPY_VERSION}/site-packages/Bio/Affy/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Affy/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Affy/${MODPY_PYCACHE}CelFile.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Affy/${MODPY_PYCACHE}CelFile.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Affy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Affy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Align/ lib/python${MODPY_VERSION}/site-packages/Bio/Align/AlignInfo.py @@ -21,25 +21,38 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/_Probcons.py lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/_TCoffee.py lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_ClustalOmega.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_ClustalOmega.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Clustalw.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Clustalw.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Dialign.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Dialign.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_MSAProbs.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_MSAProbs.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Mafft.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Mafft.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Muscle.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Muscle.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Prank.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Prank.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Probcons.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_Probcons.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_TCoffee.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}_TCoffee.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/Applications/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Align/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Align/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Align/${MODPY_PYCACHE}AlignInfo.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/${MODPY_PYCACHE}AlignInfo.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Align/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Align/_aligners.c @so lib/python${MODPY_VERSION}/site-packages/Bio/Align/_aligners.${MODPY_PYC_MAGIC_TAG}so lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/ lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/data/ lib/python${MODPY_VERSION}/site-packages/Bio/Align/substitution_matrices/data/BENNER22 @@ -82,24 +95,37 @@ lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/PhylipIO.py lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/StockholmIO.py lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}ClustalIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}ClustalIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}EmbossIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}EmbossIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}FastaIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}FastaIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}Interfaces.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}Interfaces.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}MafIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}MafIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}MauveIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}MauveIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}MsfIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}MsfIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}NexusIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}NexusIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}PhylipIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}PhylipIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}StockholmIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}StockholmIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/AlignIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/ lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Application/ lib/python${MODPY_VERSION}/site-packages/Bio/Application/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Application/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Application/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Application/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Blast/ lib/python${MODPY_VERSION}/site-packages/Bio/Blast/Applications.py @@ -109,19 +135,27 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Blast/ParseBlastTable.py lib/python${MODPY_VERSION}/site-packages/Bio/Blast/Record.py lib/python${MODPY_VERSION}/site-packages/Bio/Blast/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}Applications.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}Applications.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}NCBIWWW.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}NCBIWWW.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}NCBIXML.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}NCBIXML.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}ParseBlastTable.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}ParseBlastTable.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}Record.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}Record.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Blast/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/CAPS/ lib/python${MODPY_VERSION}/site-packages/Bio/CAPS/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/CAPS/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/CAPS/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/CAPS/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/ lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc @so lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/_cluster.${MODPY_PYC_MAGIC_TAG}so lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/cluster.c @@ -130,6 +164,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/clustermodule.c lib/python${MODPY_VERSION}/site-packages/Bio/Compass/ lib/python${MODPY_VERSION}/site-packages/Bio/Compass/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Compass/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Compass/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Compass/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Data/ lib/python${MODPY_VERSION}/site-packages/Bio/Data/CodonTable.py @@ -137,9 +172,13 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Data/IUPACData.py lib/python${MODPY_VERSION}/site-packages/Bio/Data/SCOPData.py lib/python${MODPY_VERSION}/site-packages/Bio/Data/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}CodonTable.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}CodonTable.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}IUPACData.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}IUPACData.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}SCOPData.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}SCOPData.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Data/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/ lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/Applications.py @@ -147,9 +186,13 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/Primer3.py lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/PrimerSearch.py lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}Applications.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}Applications.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}Primer3.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}Primer3.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}PrimerSearch.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}PrimerSearch.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/ lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/DTDs/ @@ -406,7 +449,9 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/XSDs/ lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/XSDs/IPGReportSet.xsd lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/${MODPY_PYCACHE}Parser.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/${MODPY_PYCACHE}Parser.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Entrez/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/ lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/Enzyme.py @@ -415,11 +460,17 @@ lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/Prosite.py lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/ScanProsite.py lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}Enzyme.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}Enzyme.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}Prodoc.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}Prodoc.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}Prosite.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}Prosite.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}ScanProsite.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}ScanProsite.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}cellosaurus.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/${MODPY_PYCACHE}cellosaurus.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/ExPASy/cellosaurus.py lib/python${MODPY_VERSION}/site-packages/Bio/File.py @@ -428,16 +479,22 @@ lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/Record.py lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/Scanner.py lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}Record.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}Record.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}Scanner.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}Scanner.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}utils.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/${MODPY_PYCACHE}utils.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/utils.py lib/python${MODPY_VERSION}/site-packages/Bio/Geo/ lib/python${MODPY_VERSION}/site-packages/Bio/Geo/Record.py lib/python${MODPY_VERSION}/site-packages/Bio/Geo/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Geo/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Geo/${MODPY_PYCACHE}Record.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Geo/${MODPY_PYCACHE}Record.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Geo/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Geo/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/ lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/BasicChromosome.py @@ -459,27 +516,46 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawe lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/_Track.py lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_AbstractDrawer.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_AbstractDrawer.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_CircularDrawer.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_CircularDrawer.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Colors.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Colors.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_CrossLink.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_CrossLink.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Diagram.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Diagram.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Feature.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Feature.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_FeatureSet.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_FeatureSet.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Graph.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_Graph.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_GraphSet.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/GenomeDiagram/${MODPY_PYCACHE}_GraphSet.${MODPY_PYC_MAGIC_TAG}pyc 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+lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}BasicChromosome.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}BasicChromosome.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}ColorSpiral.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}ColorSpiral.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}Comparative.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}Comparative.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}DisplayRepresentation.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}DisplayRepresentation.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}Distribution.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}Distribution.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}KGML_vis.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}KGML_vis.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/HMM/ lib/python${MODPY_VERSION}/site-packages/Bio/HMM/DynamicProgramming.py @@ -488,40 +564,54 @@ lib/python${MODPY_VERSION}/site-packages/Bio/HMM/Trainer.py lib/python${MODPY_VERSION}/site-packages/Bio/HMM/Utilities.py lib/python${MODPY_VERSION}/site-packages/Bio/HMM/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}DynamicProgramming.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}DynamicProgramming.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}MarkovModel.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}MarkovModel.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}Trainer.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}Trainer.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}Utilities.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}Utilities.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/HMM/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/ lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/ lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/ lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Gene/ lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Gene/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Gene/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Gene/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Gene/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/ lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/KGML_parser.py lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/KGML_pathway.py lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}KGML_parser.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}KGML_parser.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}KGML_pathway.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}KGML_pathway.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/KGML/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/ lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/REST.py lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/${MODPY_PYCACHE}REST.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/${MODPY_PYCACHE}REST.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/LogisticRegression.py lib/python${MODPY_VERSION}/site-packages/Bio/MarkovModel.py @@ -529,13 +619,17 @@ lib/python${MODPY_VERSION}/site-packages/Bio/MaxEntropy.py lib/python${MODPY_VERSION}/site-packages/Bio/Medline/ lib/python${MODPY_VERSION}/site-packages/Bio/Medline/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Medline/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Medline/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Medline/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/NMR/ lib/python${MODPY_VERSION}/site-packages/Bio/NMR/NOEtools.py lib/python${MODPY_VERSION}/site-packages/Bio/NMR/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}NOEtools.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}NOEtools.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}xpktools.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/NMR/${MODPY_PYCACHE}xpktools.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/NMR/xpktools.py lib/python${MODPY_VERSION}/site-packages/Bio/NaiveBayes.py @@ -546,10 +640,15 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/StandardData.py lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/Trees.py lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}Nexus.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}Nexus.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}Nodes.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}Nodes.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}StandardData.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}StandardData.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}Trees.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}Trees.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/cnexus.c @so lib/python${MODPY_VERSION}/site-packages/Bio/Nexus/cnexus.${MODPY_PYC_MAGIC_TAG}so @@ -577,6 +676,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Polypeptide.py lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.c @so lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.${MODPY_PYC_MAGIC_TAG}so @@ -591,41 +691,77 @@ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/StructureBuilder.py lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Superimposer.py lib/python${MODPY_VERSION}/site-packages/Bio/PDB/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}AbstractPropertyMap.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}AbstractPropertyMap.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}Atom.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}Atom.${MODPY_PYC_MAGIC_TAG}pyc 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+lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}internal_coords.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}internal_coords.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}mmcifio.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}mmcifio.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}parse_pdb_header.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}parse_pdb_header.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}vectors.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/${MODPY_PYCACHE}vectors.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/PDB/ic_data.py lib/python${MODPY_VERSION}/site-packages/Bio/PDB/ic_rebuild.py @@ -637,8 +773,11 @@ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/DefaultParser.py lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}DefaultParser.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}DefaultParser.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}mmtfio.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/${MODPY_PYCACHE}mmtfio.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmtf/mmtfio.py lib/python${MODPY_VERSION}/site-packages/Bio/PDB/parse_pdb_header.py @@ -649,11 +788,15 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/Graph.py lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/MultiGraph.py lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}Graph.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}Graph.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}MultiGraph.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}MultiGraph.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/ lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/ @@ -662,9 +805,13 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/_Phyml.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/_Raxml.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}_Fasttree.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}_Fasttree.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}_Phyml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}_Phyml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}_Raxml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}_Raxml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/Applications/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/BaseTree.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/CDAO.py @@ -678,14 +825,23 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/NexusIO.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/ lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_paml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_paml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_parse_baseml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_parse_baseml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_parse_codeml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_parse_codeml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_parse_yn00.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}_parse_yn00.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}baseml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}baseml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}chi2.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}chi2.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}codeml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}codeml.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}yn00.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/${MODPY_PYCACHE}yn00.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/_paml.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PAML/_parse_baseml.py @@ -700,21 +856,37 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/PhyloXMLIO.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/TreeConstruction.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}BaseTree.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}BaseTree.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}CDAO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}CDAO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}CDAOIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}CDAOIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}Consensus.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}Consensus.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NeXML.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NeXML.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NeXMLIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NeXMLIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}Newick.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}Newick.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NewickIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NewickIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NexusIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}NexusIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}PhyloXML.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}PhyloXML.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}PhyloXMLIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}PhyloXMLIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}TreeConstruction.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}TreeConstruction.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}_cdao_owl.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}_cdao_owl.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}_io.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}_io.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}_utils.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/${MODPY_PYCACHE}_utils.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/_cdao_owl.py lib/python${MODPY_VERSION}/site-packages/Bio/Phylo/_io.py @@ -727,13 +899,19 @@ lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/FileParser.py lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/LargeFileParser.py lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}Controller.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}Controller.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}EasyController.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}EasyController.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}FileParser.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}FileParser.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}LargeFileParser.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}LargeFileParser.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/GenePop/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/PopGen/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/ lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/PrintFormat.py @@ -741,9 +919,13 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/Restriction.py lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/Restriction_Dictionary.py lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}PrintFormat.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}PrintFormat.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}Restriction.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}Restriction.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}Restriction_Dictionary.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}Restriction_Dictionary.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/Restriction/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/ lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Cla.py @@ -754,24 +936,36 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Raf.py lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Residues.py lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Cla.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Cla.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Des.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Des.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Dom.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Dom.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Hie.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Hie.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Raf.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Raf.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Residues.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}Residues.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/ lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}blast_tab.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}blast_tab.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}blast_text.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}blast_text.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}blast_xml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/${MODPY_PYCACHE}blast_xml.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/blast_tab.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlastIO/blast_text.py @@ -780,10 +974,15 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/BlatIO.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}_base.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}_base.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}exonerate_cigar.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}exonerate_cigar.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}exonerate_text.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}exonerate_text.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}exonerate_vulgar.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/${MODPY_PYCACHE}exonerate_vulgar.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/_base.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py @@ -793,17 +992,25 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/FastaIO.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/${MODPY_PYCACHE}hhsuite2_text.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/${MODPY_PYCACHE}hhsuite2_text.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}_base.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}_base.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer2_text.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer2_text.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer3_domtab.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer3_domtab.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer3_tab.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer3_tab.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer3_text.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/${MODPY_PYCACHE}hmmer3_text.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/_base.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py @@ -813,15 +1020,22 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/${MODPY_PYCACHE}interproscan_xml.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/${MODPY_PYCACHE}interproscan_xml.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}BlatIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}BlatIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}FastaIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}FastaIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}_index.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}_index.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}_utils.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/${MODPY_PYCACHE}_utils.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_index.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/ @@ -829,16 +1043,24 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/NCBIStandalone.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/ParserSupport.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}NCBIStandalone.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}NCBIStandalone.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}ParserSupport.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}ParserSupport.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_legacy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/ lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}_base.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}_base.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}hit.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}hit.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}hsp.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}hsp.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}query.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/${MODPY_PYCACHE}query.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/_base.py lib/python${MODPY_VERSION}/site-packages/Bio/SearchIO/_model/hit.py @@ -870,27 +1092,49 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/UniprotIO.py lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/XdnaIO.py lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}AbiIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}AbiIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}AceIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}AceIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}FastaIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}FastaIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}GckIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}GckIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}IgIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}IgIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}InsdcIO.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}InsdcIO.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}Interfaces.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/${MODPY_PYCACHE}Interfaces.${MODPY_PYC_MAGIC_TAG}pyc 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+lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/${MODPY_PYCACHE}chisq.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/${MODPY_PYCACHE}chisq.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/${MODPY_PYCACHE}codonalignment.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/${MODPY_PYCACHE}codonalignment.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/${MODPY_PYCACHE}codonseq.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/${MODPY_PYCACHE}codonseq.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/chisq.py lib/python${MODPY_VERSION}/site-packages/Bio/codonalign/codonalignment.py @@ -1003,16 +1292,27 @@ lib/python${MODPY_VERSION}/site-packages/Bio/kNN.py lib/python${MODPY_VERSION}/site-packages/Bio/motifs/ lib/python${MODPY_VERSION}/site-packages/Bio/motifs/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}alignace.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}alignace.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}clusterbuster.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}clusterbuster.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}mast.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}mast.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}matrix.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}matrix.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}meme.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}meme.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}minimal.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}minimal.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}pfm.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}pfm.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}thresholds.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}thresholds.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}transfac.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}transfac.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}xms.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/${MODPY_PYCACHE}xms.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/motifs/_pwm.c @so lib/python${MODPY_VERSION}/site-packages/Bio/motifs/_pwm.${MODPY_PYC_MAGIC_TAG}so @@ -1020,14 +1320,18 @@ lib/python${MODPY_VERSION}/site-packages/Bio/motifs/alignace.py lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/ lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/${MODPY_PYCACHE}_xxmotif.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/${MODPY_PYCACHE}_xxmotif.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/motifs/applications/_xxmotif.py lib/python${MODPY_VERSION}/site-packages/Bio/motifs/clusterbuster.py lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/ lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/${MODPY_PYCACHE}db.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/${MODPY_PYCACHE}db.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/motifs/jaspar/db.py lib/python${MODPY_VERSION}/site-packages/Bio/motifs/mast.py @@ -1042,8 +1346,11 @@ lib/python${MODPY_VERSION}/site-packages/Bio/pairwise2.py lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/ lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}phen_micro.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}phen_micro.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}pm_fitting.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/${MODPY_PYCACHE}pm_fitting.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/phen_micro.py lib/python${MODPY_VERSION}/site-packages/Bio/phenotype/pm_fitting.py @@ -1054,17 +1361,22 @@ lib/python${MODPY_VERSION}/site-packages/BioSQL/DBUtils.py lib/python${MODPY_VERSION}/site-packages/BioSQL/Loader.py lib/python${MODPY_VERSION}/site-packages/BioSQL/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}BioSeq.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}BioSeq.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}BioSeqDatabase.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}BioSeqDatabase.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}DBUtils.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}DBUtils.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}Loader.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}Loader.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/BioSQL/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc -lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/ -lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/PKG-INFO -lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/SOURCES.txt -lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/dependency_links.txt -lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/requires.txt -lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/top_level.txt +lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}.dist-info/ +lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}.dist-info/LICENSE.rst +lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}.dist-info/METADATA +lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}.dist-info/RECORD +lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}.dist-info/WHEEL +lib/python${MODPY_VERSION}/site-packages/biopython-${MODPY_EGG_VERSION}.dist-info/top_level.txt share/doc/py-biopython/ share/doc/py-biopython/Tutorial.pdf share/doc/py-biopython/biopdb_faq.pdf diff --git a/converters/py-html2text/Makefile b/converters/py-html2text/Makefile index b29d93942b2..a5d9f8ae4d3 100644 --- a/converters/py-html2text/Makefile +++ b/converters/py-html2text/Makefile @@ -3,7 +3,7 @@ COMMENT = HTML to markdown-formatted text converter MODPY_EGG_VERSION = 2020.1.16 DISTNAME = html2text-${MODPY_EGG_VERSION} PKGNAME = py-${DISTNAME} -REVISION = 1 +REVISION = 2 CATEGORIES = converters HOMEPAGE = http://alir3z4.github.io/html2text/ @@ -14,8 +14,7 @@ PERMIT_PACKAGE = Yes MODULES = lang/python MODPY_PI = Yes -MODPY_SETUPTOOLS = Yes -MODPY_PYTEST = Yes +MODPY_PEP517 = setuptools FLAVORS = python3 FLAVOR = python3 diff --git a/converters/py-html2text/pkg/PLIST b/converters/py-html2text/pkg/PLIST index abb2f6338c0..d94f9b30fb2 100644 --- a/converters/py-html2text/pkg/PLIST +++ b/converters/py-html2text/pkg/PLIST @@ -2,22 +2,30 @@ @pkgpath converters/py-html2text bin/${MODPY_PY_PREFIX}html2text lib/python${MODPY_VERSION}/site-packages/html2text/ -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/ -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/PKG-INFO -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/SOURCES.txt -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/dependency_links.txt -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/entry_points.txt -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/not-zip-safe -lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/top_level.txt +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/ +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/AUTHORS.rst +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/COPYING +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/METADATA +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/RECORD +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/WHEEL +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/entry_points.txt +lib/python${MODPY_VERSION}/site-packages/html2text-${MODPY_EGG_VERSION}.dist-info/top_level.txt lib/python${MODPY_VERSION}/site-packages/html2text/__init__.py lib/python${MODPY_VERSION}/site-packages/html2text/__main__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}__main__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}__main__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}cli.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}cli.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}config.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}config.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}elements.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}elements.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}typing.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}typing.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}utils.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/html2text/${MODPY_PYCACHE}utils.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/html2text/cli.py lib/python${MODPY_VERSION}/site-packages/html2text/config.py diff --git a/converters/py-num2words/Makefile b/converters/py-num2words/Makefile index e384e3bc9a5..8f971db108d 100644 --- a/converters/py-num2words/Makefile +++ b/converters/py-num2words/Makefile @@ -1,8 +1,9 @@ COMMENT = convert numbers to words MODPY_EGG_VERSION = 0.5.11 -DISTNAME = num2words-${MODPY_EGG_VERSION} -PKGNAME = py-${DISTNAME} +REVISION = 0 +DISTNAME = num2words-${MODPY_EGG_VERSION} +PKGNAME = py-${DISTNAME} CATEGORIES = converters @@ -17,8 +18,7 @@ FLAVORS = python3 FLAVOR = python3 MODPY_PI = Yes -MODPY_SETUPTOOLS = Yes -MODPY_PYTEST = Yes +MODPY_PEP517 = setuptools # needs delegator.py MODPY_PYTEST_ARGS = --ignore tests/test_cli.py diff --git a/converters/py-vdf/Makefile b/converters/py-vdf/Makefile index e082dee6672..00bf0fc80b4 100644 --- a/converters/py-vdf/Makefile +++ b/converters/py-vdf/Makefile @@ -1,6 +1,7 @@ COMMENT = Library for working with Valve's VDF text format MODPY_EGG_VERSION = 3.4 +REVISION = 0 DISTNAME = vdf-${MODPY_EGG_VERSION} PKGNAME = py-${DISTNAME} CATEGORIES = converters @@ -11,7 +12,7 @@ PERMIT_PACKAGE = Yes MODULES = lang/python MODPY_PI = Yes -MODPY_SETUPTOOLS = Yes +MODPY_PEP517 = setuptools FLAVORS = python3 FLAVOR = python3 diff --git a/converters/py-vdf/pkg/PLIST b/converters/py-vdf/pkg/PLIST index 08ce9e11230..bf616565c79 100644 --- a/converters/py-vdf/pkg/PLIST +++ b/converters/py-vdf/pkg/PLIST @@ -1,12 +1,14 @@ lib/python${MODPY_VERSION}/site-packages/vdf/ -lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/ -lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/PKG-INFO -lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/SOURCES.txt -lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/dependency_links.txt -lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/top_level.txt -lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/zip-safe +lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}.dist-info/ +lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}.dist-info/METADATA +lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}.dist-info/RECORD +lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}.dist-info/WHEEL +lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}.dist-info/top_level.txt +lib/python${MODPY_VERSION}/site-packages/vdf-${MODPY_EGG_VERSION}.dist-info/zip-safe lib/python${MODPY_VERSION}/site-packages/vdf/__init__.py ${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/vdf/${MODPY_PYCACHE}/ +lib/python${MODPY_VERSION}/site-packages/vdf/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/vdf/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc +lib/python${MODPY_VERSION}/site-packages/vdf/${MODPY_PYCACHE}vdict.${MODPY_PYC_MAGIC_TAG}${MODPY_PYOEXTENSION} lib/python${MODPY_VERSION}/site-packages/vdf/${MODPY_PYCACHE}vdict.${MODPY_PYC_MAGIC_TAG}pyc lib/python${MODPY_VERSION}/site-packages/vdf/vdict.py