870ff4f84f
An Open Source program library for molecular simulation applications PR: 42332 Submitted by: Glenn Johnson <glennpj@charter.net>
990 lines
54 KiB
Plaintext
990 lines
54 KiB
Plaintext
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%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glu_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct_noh
|
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%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_ct_uni
|
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|
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|
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%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_neutral
|
|
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|
|
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|
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%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt_noh
|
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%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_nt_uni
|
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|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamic_acid_uni2
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_ct_uni
|
|
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|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_noh
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_uni
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glutamine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_nt_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/gly_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_ct_uni2
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/glycine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/guanine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hid_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hie_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/hip_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_ct_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_ct
|
|
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|
|
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|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_noh
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_nt_uni
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_deltah_uni
|
|
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|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_ct_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_epsilonh_uni2
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_ct_uni
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_plus_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/histidine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/ile_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_ct_uni
|
|
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|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/isoleucine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leu_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_ct_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/leucine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_neutral
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lys_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_ct_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_neutral
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/lysine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/met_sidechain_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_calpha
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_ct_uni
|
|
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|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_noh
|
|
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|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methionine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/methyl
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/na_phosphate
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/nmethyl_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_uni2
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_ct_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_ct_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_ct_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_nt_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_nt_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_uni
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_glycine_uni3
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt_noh
|
|
%%PYTHON_SITELIBDIR%%/MMTK/Database/Groups/peptide_nt_uni
|
|
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%%PYTHON_SITELIBDIR%%/MMTK/PDB.py
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%%PYTHON_SITELIBDIR%%/MMTK/ParticleProperties.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/ProteinEnvironment.py
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%%PYTHON_SITELIBDIR%%/MMTK/ProteinEnvironment.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Proteins.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/Random.py
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%%PYTHON_SITELIBDIR%%/MMTK/Random.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Random.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/Skeleton.py
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%%PYTHON_SITELIBDIR%%/MMTK/Skeleton.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/Solvation.py
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%%PYTHON_SITELIBDIR%%/MMTK/Solvation.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Solvation.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/ThreadManager.py
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%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/Tkwindow.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/manager.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer/manager.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/Trajectory.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Universe.py
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%%PYTHON_SITELIBDIR%%/MMTK/Universe.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Utility.py
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%%PYTHON_SITELIBDIR%%/MMTK/Utility.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Utility.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/Visualization.py
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%%PYTHON_SITELIBDIR%%/MMTK/Visualization.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/Visualization_win32.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/__init__.py
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%%PYTHON_SITELIBDIR%%/MMTK/__init__.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/__init__.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_DCD.so
|
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_deformation.so
|
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_dynamics.so
|
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_forcefield.so
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_minimization.so
|
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_surface.so
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_trajectory.so
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/MMTK_universe.so
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%%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%/lapack_mmtk.so
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%%PYTHON_SITELIBDIR%%/MMTK/surfm.py
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%%PYTHON_SITELIBDIR%%/MMTK/surfm.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/surfm.pyo
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%%PYTHON_SITELIBDIR%%/MMTK/tess.py
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%%PYTHON_SITELIBDIR%%/MMTK/tess.pyc
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%%PYTHON_SITELIBDIR%%/MMTK/tess.pyo
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%%PORTDOCS%%share/doc/mmtk/Doc/CHANGELOG
|
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%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK.html
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%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_8.html
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%%PORTDOCS%%share/doc/mmtk/Doc/HTML/MMTK_9.html
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%%PORTDOCS%%share/doc/mmtk/Doc/PDF/manual.pdf
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%%PORTDOCS%%share/doc/mmtk/Doc/XML/mmtk-user.xml
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%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/DocBook.py
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%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/DocBook2HTML.py
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%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/DocBook2LaTeX.py
|
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%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/README
|
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%%PORTDOCS%%share/doc/mmtk/Doc/XMLConversion/esis_builder.py
|
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%%PORTDOCS%%share/doc/mmtk/LICENSE
|
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%%PORTDOCS%%share/examples/mmtk/Examples/DNA/construction.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/DNA/dna_construction.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/LangevinDynamics/LangevinDynamics.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/LangevinDynamics/compile.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/LangevinDynamics/example.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/MPI/md.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/charge_fit.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/construct_from_pdb.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/lattice.py
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%%PORTDOCS%%share/examples/mmtk/Examples/Miscellaneous/vector_field.py
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%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/argon.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/protein.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/restart.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/solvation.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/MolecularDynamics/solvent.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/MonteCarlo/backbone.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/constrained_modes.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/deformation_modes.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/harmonic_force_field.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/NormalModes/modes.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/analysis.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/construction.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/protein_analysis.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Proteins/protein_construction.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/calpha_trajectory.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/dcd_export.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/dcd_import.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/snapshot.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/trajectory_average.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/trajectory_extraction.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Trajectories/view_trajectory.py
|
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%%PORTDOCS%%share/examples/mmtk/Examples/Visualization/additional_objects.py
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Atoms
|
|
@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Complexes
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Groups
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Molecules
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/PDB
|
|
@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database/Proteins
|
|
@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Database
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/ForceFields/Amber
|
|
@dirrm %%PYTHON_SITELIBDIR%%/MMTK/ForceFields
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Tk
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Tools/TrajectoryViewer
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/Tools
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK/freebsd%%MAJOR%%
|
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@dirrm %%PYTHON_SITELIBDIR%%/MMTK
|
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%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/HTML
|
|
%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/PDF
|
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%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/XML
|
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%%PORTDOCS%%@dirrm share/doc/mmtk/Doc/XMLConversion
|
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%%PORTDOCS%%@dirrm share/doc/mmtk/Doc
|
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%%PORTDOCS%%@dirrm share/doc/mmtk
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/DNA
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/LangevinDynamics
|
|
%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/MPI
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Miscellaneous
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/MolecularDynamics
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/MonteCarlo
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/NormalModes
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Proteins
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Trajectories
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples/Visualization
|
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%%PORTDOCS%%@dirrm share/examples/mmtk/Examples
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%%PORTDOCS%%@dirrm share/examples/mmtk
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