cpet/freebsd-ports
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
c5877f4f19
freebsd-ports/science
History
Baptiste Daroussin c5fe34636c Update jasper to 2.0.16 
This is needed to be able to update gegl to latest version.
Bump revision of all consumer as the ABI is not 100% backward compatible.
Provide a patch for graphics/devil to properly build with latest jasper.
While here add a missing USES=xorg to graphics/devil
2019-12-27 13:43:00 +00:00
..
2d-rewriter Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
abinit Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
afni math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
agrum science/agrum: fix build on powerpc64 elfv2 2019-12-22 18:08:07 +00:00
aircraft-datcom
ALPSCore devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
antioch math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
apbs
atom
atompaw
avogadro2
avogadrolibs
bagel devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
bddsolve devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
berkeleygw
bodr
brian
buddy
cdcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
cdf
cdo Update jasper to 2.0.16 2019-12-27 13:43:00 +00:00
cgnslib Add USES=xorg and USES=gl 2019-11-07 18:41:56 +00:00
cgribex Update jasper to 2.0.16 2019-12-27 13:43:00 +00:00
checkmol Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
chemical-mime-data print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
chemps2
chemtool Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
chemtool-devel Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
chrono devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
clhep
clipper
code_saturne Unbreak bulk -a with non default version of python3 2019-11-20 14:47:05 +00:00
colt Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
coordgenlibs devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
coot Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
cp2k Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
cp2k-data
crf++
dalton
datawarrior Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
dcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
devisor Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
dftbplus
dkh
dlib-cpp Add USES=xorg and USES=gl 2019-11-07 18:41:56 +00:00
dlpoly-classic Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
drawxtl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
dvc
eccodes Update to 2.14.1 2019-11-04 15:58:47 +00:00
elk
epte
erd
erkale science/erkale: Update g20190812 -> g20191120 2019-11-23 16:27:52 +00:00
erkale-pseudopotentials
esys-particle devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
fastcap
fasthenry
fisicalab math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
fleur science/fleur: Spell HDF5_CMAKE_ON correctly 2019-10-06 08:37:06 +00:00
fsom
fvcom
fvcom-mpi
gabedit Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
gamess-us
gchemutils Update to 0.10.46 and only keep one libgoffice version 2019-12-16 17:06:38 +00:00
gdma
getdp - Update to 3.3.0. 2019-12-22 02:28:57 +00:00
ghemical Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
ghmm print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
gnudatalanguage There is a bug with GraphicsMagick: see 2019-11-23 18:05:22 +00:00
gpaw-setups
gramps science/gramps: Update to 5.1.1 2019-12-10 13:54:03 +00:00
grib_api
gromacs science/gromacs: Update 2019.4 -> 2019.5 2019-12-24 07:45:13 +00:00
gsmc print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
gtamsanalyzer
gwyddion Deprecate a few ports 2019-12-26 07:54:28 +00:00
h5utils
h5z-zfp
harminv
hdf
hdf5 Add PARALLEL option 2019-09-30 11:32:04 +00:00
hdf5-18
healpix
highfive devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
hypre
iboview devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
InsightToolkit - Update devel/gdcm to 3.0.4. 2019-10-19 23:45:10 +00:00
isaac-cfd
jdftx math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
jmol science/jmol: Update 14.30.0 -> 14.30.1 2019-12-14 07:44:40 +00:00
jstrack Update to version 3.4.0, which includes updated documentation, links to 2019-10-02 16:14:46 +00:00
kalzium KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
kim-api
kst2 math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
lammps science/lammps: fix build on GCC architectures 2019-11-28 14:20:18 +00:00
lamprop
latte devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
libaec
libccp4
libcint
libctl
libefp
libgeodecomp devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
libghemical Pet portlint (trailing whitespace). 2019-11-08 03:23:25 +00:00
libgridxc
libint
libint2 devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
libkml devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
liblinear
libmsym
liboglappth Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
lm
luscus Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
madness Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
maeparser devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
massxpert Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit Unbreak medit. 2019-11-20 20:40:53 +00:00
meep Deprecate ports broken for too long 2019-12-10 09:02:42 +00:00
metaphysicl science/metaphysicl: 0.5.2 -> 0.6.0 2019-10-13 21:17:17 +00:00
minc2
mmdb2
mmtf-cpp
mol2ps
molgif Bump PORTREVISION after r517743 to force relinking. 2019-11-16 12:52:39 +00:00
molscript Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
molsketch
mpb
mpqc Unmark these ports broken on aarch64. 2019-11-08 03:54:11 +00:00
msms
multiwfn
namd
ncnn science/ncnn: Update 20191113 -> 20191223 2019-12-24 07:25:08 +00:00
nest math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
netcdf Update to 4.7.3 2019-12-08 16:52:27 +00:00
netcdf-cxx
netcdf-fortran Update to 4.5.2 2019-09-26 18:13:09 +00:00
nifticlib
nwchem science/nwchem: Update 6.8.1.20190820 -> 7.0.0-beta1 2019-11-23 17:44:06 +00:00
nwchem-data
octopus Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
openbabel
openkim
openkim-models
openmx Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
opensim-core Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
p5-Geo-WebService-Elevation-USGS Update to 0.116 2019-10-28 14:57:46 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol science/packmol: Pack molecules in defined regions of space 2019-09-22 19:06:43 +00:00
pagmo2 Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
paje
paraview Unbreak 2019-11-07 17:28:56 +00:00
pcmsolver science/pcmsolver: fix build on GCC architectures 2019-10-27 19:19:07 +00:00
PETSc Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
pnetcdf
psychopy Deprecate a few ports 2019-12-26 07:54:28 +00:00
pulseview devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
py-abipy
py-asdf Change RUN_DEPENDS from py-semantic_version to py-semantic_version26 2019-09-26 18:16:28 +00:00
py-ase science/py-ase: Update 3.18.1 -> 3.19.0 2019-12-27 06:46:45 +00:00
py-avogadrolibs
py-cdo
py-chainer science/py-chainer: Update 6.5.0 -> 7.0.0 2019-12-06 05:52:06 +00:00
py-chainer-chemistry science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0 2019-12-22 03:10:17 +00:00
py-chempy science/py-chempy: Update 0.7.8 -> 0.7.9 2019-10-12 15:55:43 +00:00
py-coards
py-DendroPy
py-dlib devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
py-eccodes-python Update to 0.9.4 2019-12-08 17:03:53 +00:00
py-geometer Update to 0.2.0 2019-09-25 20:41:50 +00:00
py-gpaw
py-GPy science/py-GPy: Update 1.9.8 -> 1.9.9 2019-10-20 00:41:22 +00:00
py-GPyOpt
py-gsd science/py-gsd: Update 1.8.1 -> 1.9.3 2019-10-12 16:47:23 +00:00
py-h5py
py-hcluster Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.4 -> 1.4.5 2019-10-12 16:44:38 +00:00
py-netCDF4
py-obspy
py-oddt science/py-oddt: Update 0.6 -> 0.7 2019-12-27 05:12:21 +00:00
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pydicom
py-PyFR devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-pygeodesy
py-pymatgen
py-pymol
py-pyosf
py-PyQuante Unmark these ports broken on aarch64. 2019-11-08 03:54:11 +00:00
py-pysal
py-pyteomics
py-pyteomics.biolccc Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-qcelemental science/py-qcelemental: Update 0.9.0 -> 0.11.0 2019-10-29 03:42:56 +00:00
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-ScientificPython Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
py-scikit-fuzzy science/py-scikit-fuzzy: Update 0.4.1 -> 0.4.2 2019-11-16 09:42:27 +00:00
py-scikit-learn - Update to 0.22 2019-12-17 13:09:33 +00:00
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib
py-tensorflow Unbreak bulk -a with non default versions of python3 2019-11-20 14:42:36 +00:00
py-tensorflow-estimator Mark BROKEN: fails to build 2019-11-20 14:00:42 +00:00
py-veusz science/py-veusz: Update 3.0.1 -> 3.1 2019-10-29 03:36:12 +00:00
py-ws2300
pybrain
pycdf Deprecate a few ports 2019-12-26 07:54:28 +00:00
pynn
qbox
qcl
qmcpack devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm - Update to 3.1.4 2019-11-29 23:26:04 +00:00
R-cran-cmprsk - Update to 2.2-9 2019-10-11 09:12:52 +00:00
R-cran-DCluster
R-cran-e1071 - Update to 1.7-3 2019-11-28 14:43:13 +00:00
R-cran-eco
R-cran-Epi - Update to 2.40 2019-11-28 00:12:45 +00:00
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab - Update to 0.9-29 2019-11-14 22:29:41 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
rmf devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson Cosmetic change 2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
scidavis math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.7 2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
silo
simbody science/simbody: Update 3.6.1 -> 3.7 2019-12-09 16:20:00 +00:00
simgrid devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
simint
simlib
simsmith Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
smoldyn Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
sparta
spglib
step KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
svmlight
szip
teem
tfel science/tfel: update to version 3.3 2019-12-21 19:53:14 +00:00
tinker science/tinker: Update 8.7.1 -> 8.7.2 2019-11-29 07:44:51 +00:00
udunits
v_sim Make fetchable again. 2019-11-19 21:38:47 +00:00
vipster Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
vmd Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
voro++
wannier90
wwplot
wxmacmolplt
xcrysden Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
xdrawchem
xfce4-equake-plugin science/xfce4-equake-plugin: fix build on GCC architectures 2019-10-02 14:02:33 +00:00
yoda
Makefile New port: science/highfive: Header-only C++ HDF5 interface 2019-11-03 01:27:45 +00:00