freebsd-ports/science
Yuri Victorovich 99fd558a6b science/sparta: Update 16Apr2019 -> 9Sep2019
Reported by:	github release notification
2019-09-10 03:18:50 +00:00
..
2d-rewriter
abinit
afni Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
agrum
aircraft-datcom
ALPSCore devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
antioch
apbs
atom
atompaw
avogadro2
avogadrolibs
bagel devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
bddsolve devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
berkeleygw
bodr
brian
buddy
cdcl
cdf - Switch to new test framework (note that test currently segfaults) 2019-08-28 09:02:41 +00:00
cdo
cgnslib
cgribex
checkmol - Rebuild bootstrap (ppcx64 and ppc386) with ld patches 2019-09-03 15:51:50 +00:00
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne - Add LICENSE_FILE 2019-08-22 09:02:37 +00:00
colt
coordgenlibs devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
coot
cp2k
cp2k-data
crf++
dalton science/dalton: Update 2018.0 -> 2018.2 2019-08-04 04:22:31 +00:00
datawarrior
dcl
devisor
dftbplus
dkh
dlib-cpp
dlpoly-classic Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
drawxtl
dvc
eccodes Update to 2.13.1 2019-08-31 17:11:36 +00:00
elk
epte
erd
erkale science/erkale: Fix RUN_DEPENDS 2019-08-17 06:19:00 +00:00
erkale-pseudopotentials
esys-particle devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
fastcap
fasthenry
fisicalab
fleur
fsom
fvcom Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
fvcom-mpi Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
gabedit
gamess-us Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps
grib_api Mark CONFLICTS_INSTALL between science/eccodes and science/grib_api 2019-08-31 11:21:16 +00:00
gromacs devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
hypre
iboview devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
InsightToolkit Remove patch that does not apply 2019-09-05 20:29:09 +00:00
isaac-cfd
jdftx
jmol science/jmol: Update 14.29.51 -> 14.29.52 2019-08-25 19:22:32 +00:00
jstrack
kalzium KDE Applications: update to 19.08.1 2019-09-05 18:20:14 +00:00
kim-api science/kim-api: Update 2.1.2 -> 2.1.3 2019-08-31 14:45:22 +00:00
kst2
lammps science/lammps: patch_6Aug2019 -> stable_7Aug2019 2019-08-08 01:37:14 +00:00
lamprop
latte
libaec
libccp4
libcint
libctl
libefp
libgeodecomp devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
libghemical
libgridxc
libint
libint2 devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
libkml devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
libsvm-python
libvdwxc
libxc
liggghts
lm
luscus
madness
maeparser devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
metaf2xml Mark BROKEN: unfetchable 2019-08-05 06:37:30 +00:00
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps - Rebuild bootstrap (ppcx64 and ppc386) with ld patches 2019-09-03 15:51:50 +00:00
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn
namd
ncnn science/ncnn: Update 20190611-40-gd3be711 -> 20190611-113-g46e7ac7 2019-09-02 05:58:59 +00:00
nest
netcdf Update to 4.7.1 2019-08-31 17:11:41 +00:00
netcdf-cxx Remove CONFLICTS: it is over 5 years ago 2019-08-31 17:11:46 +00:00
netcdf-fortran Update to 4.5.1 2019-09-05 17:07:11 +00:00
nifticlib
nwchem science/nwchem: Update 6.8.1.20190816 (b8ef5a23b) -> 6.8.1.20190820 (2450e37ef) 2019-08-21 05:43:55 +00:00
nwchem-data
octopus
openbabel
openkim
openkim-models Add compiler:c++11-lang to USES to fix build on gcc-based architectures: 2019-08-11 00:13:02 +00:00
openmx
opensim-core science/opensim-core: Add the JAVA option that adds the Java binding 2019-08-24 22:09:03 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.115 2019-09-03 19:12:19 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
pagmo2 devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
paje
paraview
pcmsolver
PETSc
pnetcdf
psychopy
pulseview devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
py-abipy
py-asdf Update to 2.4.2 2019-09-03 19:09:27 +00:00
py-ase
py-avogadrolibs
py-cdo
py-chainer science/py-chainer: Update 6.2.0 -> 6.3.0 2019-08-25 19:14:49 +00:00
py-chainer-chemistry Revert r508450 2019-08-09 18:34:46 +00:00
py-chempy
py-coards
py-DendroPy Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
py-dlib devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
py-eccodes-python Use PYNUMPY 2019-08-03 20:56:09 +00:00
py-geometer Use PYNUMPY 2019-08-03 20:56:13 +00:00
py-gpaw Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 1.7.0 -> 1.8.1 2019-08-20 06:47:39 +00:00
py-h5py Update to 2.10.0 2019-09-07 22:44:39 +00:00
py-hcluster
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4
py-obspy
py-oddt
py-OpenFermion science/py-OpenFermion: Update 0.9.0 -> 0.10.0 2019-08-19 10:17:11 +00:00
py-openpiv
py-paida
py-paramz
py-phono3py
py-phonopy science/py-phonopy: Update 2.2.0 -> 2.3.0 2019-08-31 06:06:51 +00:00
py-pupynere
py-pyaixi
py-pydicom - Update to 1.3.0 2019-09-04 02:25:53 +00:00
py-PyFR
py-pygeodesy
py-pymatgen
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qcelemental science/py-qcelemental: Update 0.6.1 -> 0.7.0 2019-08-31 06:11:10 +00:00
py-qcengine science/py-qcengine: Update 0.8.2 -> 0.10.0 2019-08-31 06:12:38 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus science/py-ruffus: Update to 2.8.3 2019-08-15 21:30:19 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.13.0 -> 1.14.1 2019-08-31 15:13:52 +00:00
py-tensorflow Mark BROKEN 2019-09-08 05:49:32 +00:00
py-tensorflow-estimator science/py-tensorflow-estimator: Add NO_ARCH=yes; Fix build for the port name having hyphen (vs. underscore) in PORTNAME. 2019-08-13 00:00:42 +00:00
py-veusz
py-ws2300
pybrain
pycdf
pynn
qbox
qcl
qmcpack devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm - Update to 3.1.3 2019-08-25 12:24:25 +00:00
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: fix build on GCC architectures 2019-08-20 00:08:48 +00:00
rmf devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo Update to 2.1.1 2019-08-28 23:53:27 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4 Update version requirement of RUN_DEPENDS 2019-08-28 23:53:32 +00:00
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody science/simbody: Backport the pull request that fixed the pathname handling on BSDs, and one failing testcase. 2019-08-08 04:53:25 +00:00
simgrid devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
simint
simlib
simsmith
smoldyn
sparta science/sparta: Update 16Apr2019 -> 9Sep2019 2019-09-10 03:18:50 +00:00
spglib
step KDE Applications: update to 19.08.1 2019-09-05 18:20:14 +00:00
svmlight
szip
teem
tfel devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
tinker Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
udunits
v_sim
vipster
vmd science/vmd: Add USES=gl 2019-08-15 16:06:32 +00:00
voro++
wannier90 science/wannier90: Update 2.1.0 -> 3.0.0 2019-08-04 04:09:32 +00:00
wwplot science/wwplot: Update 0.0.6 -> 0.0.7 2019-08-18 16:49:45 +00:00
wxmacmolplt
xcrysden
xdrawchem
xfce4-equake-plugin
xmakemol Depreacte libGLw and dependent ports 2019-09-07 08:34:53 +00:00
yoda
Makefile Sort SUBDIRs 2019-08-31 08:30:30 +00:00