Martin Wilke 1b607e2b11 - Update to 2012.06.20 ... PR: 176544 Submitted by: Ports Fury		2013-03-14 05:27:58 +00:00
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adun
ariadne
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida
babel	- Mark conflict with science/openbabel	2012-12-11 14:24:51 +00:00
biococoa
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast
blat
boinc-simap	Remove compatibility with FreeBSD 7.X	2013-03-06 23:31:58 +00:00
chemeq	Convert USE_BISON to USES= bison	2013-03-08 11:32:11 +00:00
clustalw
consed
crux
dotter
embassy
emboss
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan
lamarc
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden	Update to 5.0.4	2012-12-14 17:47:16 +00:00
mopac
mrbayes
mummer
muscle
ncbi-toolkit	- Update to 2012.06.20	2013-03-14 05:27:58 +00:00
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	Cleanup supporting perl version 5.8 and 5.10,	2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.5	2012-12-16 04:22:15 +00:00
p5-Bio-Glite
p5-Bio-Graphics	Add missing item to pkg-plist reported by QAT but not reported by poudriere.	2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB	- Update to 1.27	2013-02-05 14:45:14 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo	- Update to 0.52 [1]	2013-02-16 14:58:51 +00:00
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml	- Update to 20121109.	2013-02-04 10:07:30 +00:00
platon
plink
plinkseq
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
pymol
python-nexus
rasmol
recombine
ruby-bio
seaview	Bump PORTREVISION after DESKTOP_ENTRIES update	2013-01-23 15:00:18 +00:00
seqan
seqio
sim4
ssaha
t_coffee	- Update to 9.03.	2013-01-14 08:04:38 +00:00
tinker
treepuzzle
treeviewx
tRNAscan-SE
ugene	Unbreak on 7.X and i386 systems.	2013-02-25 13:00:15 +00:00
velvet
wise	- Update to 2.4.1	2013-03-02 14:50:25 +00:00
xdrawchem	- Strip header at request of original creator	2013-01-27 05:55:20 +00:00
xmolwt
Makefile	Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.	2013-02-23 04:50:48 +00:00