Muhammad Moinur Rahman 5944c3a3e3 biology/lamarc: Refactor after wxgtk28 removal ... - Pet portclippy		2022-12-31 04:54:58 +01:00
..
abyss
ad2vcf
artemis
augustus
avida
babel
bamtools
bamutil
barrnap
bbmap
bcftools
bedtools
bfc
bio-mocha
bioawk
biococoa
biolibc	biology/biolibc: Update to 0.2.4	2022-12-11 14:06:23 -06:00
biolibc-tools	biology/biolibc-tools: Update to 0.1.4.1	2022-12-13 18:11:56 -06:00
bioparser
biosig	biology/biosig: Update 2.4.3 -> 2.5.0	2022-12-30 00:32:02 -08:00
biosoup
biostar-tools
bolt-lmm
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda	biology/fasda: Fast and simple differential analysis	2022-12-12 11:17:22 -06:00
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim	biology/fastq-trim: Update to 0.1.2	2022-12-11 15:24:05 -06:00
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy	biology/hyphy: Update to 2.5.43	2022-12-25 20:17:42 -04:00
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
kmcp	all: Bump PORTREVISION after lang/go{118,119} update	2022-12-11 06:17:27 -05:00
lamarc	biology/lamarc: Refactor after wxgtk28 removal	2022-12-31 04:54:58 +01:00
libbigwig
libcombine
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
mafft
mapm3
megahit
metaeuk
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-entrez-direct	all: Bump PORTREVISION after lang/go{118,119} update	2022-12-11 06:17:27 -05:00
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier	biology/peak-classifier: Update to 0.1.4-5	2022-12-11 14:09:20 -06:00
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler	biology/pooler: update to 1.86	2022-12-19 08:56:15 +01:00
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig	biology/py-biosig: New port: Library for reading and writing different biosignal data format	2022-12-30 00:32:02 -08:00
py-bx-python
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml
py-libsedml
py-loompy
py-macs2
py-mrcfile
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal	biology/py-pyrodigal: Update 2.0.2 -> 2.0.3	2022-12-22 00:43:31 -08:00
py-pysam
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
rna-seq	biology/rna-seq: Metaport for RNA-Seq analysis	2022-12-12 11:30:00 -06:00
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqio
seqkit	all: Bump PORTREVISION after lang/go{118,119} update	2022-12-11 06:17:27 -05:00
seqtk
sigviewer
sim4
slclust
smithwaterman
snpeff	biology/snpeff: Update to 5.1	2022-12-19 12:50:00 -06:00
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit	biology/taxonkit: Update 0.14.0 -> 0.14.1	2022-12-26 23:50:58 -08:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer	biology/unikmer: Update 0.19.0 -> 0.19.1	2022-12-26 23:50:56 -08:00
vcf2hap
vcf-split	biology/vcf-split: Update to 0.1.5-4	2022-12-11 14:11:33 -06:00
vcflib
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile	biology/py-biosig: New port: Library for reading and writing different biosignal data format	2022-12-30 00:32:02 -08:00