freebsd-ports/biology
Adam Weinberger 26f58ed1c0 After r390893, chmod u+w/u-w for stripping perl XS modules is unnecessary,
and in fact now leads to incorrect permissions.

Remove all instances of it from perl@ ports.
2015-06-29 15:47:44 +00:00
..
ariadne
artemis
avida Use BROKEN helpers 2015-06-27 14:29:25 +00:00
babel Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
bcftools New port: biology/bcftools 2015-06-05 21:01:13 +00:00
biococoa MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
biojava
blat
chemeq
clustalw MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
consed
crux
emboss
fasta
fasta3 - Update to 36.3.7a 2015-05-07 02:33:57 +00:00
fastdnaml
fluctuate Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
iolib
jalview Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
lagan - Fix shebangs 2015-06-11 10:17:24 +00:00
lamarc
libsbml - Update to 5.11.4 2015-05-12 08:58:14 +00:00
linux-foldingathome
mafft Use BROKEN helpers 2015-06-27 14:30:19 +00:00
mapm3
migrate - Update options 2015-06-28 15:30:41 +00:00
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+ - Unbreak 2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl After r390893, chmod u+w/u-w for stripping perl XS modules is unnecessary, 2015-06-29 15:47:44 +00:00
p5-Bio-ASN1-EntrezGene Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The 2015-06-24 15:16:23 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS - Add NO_ARCH 2015-05-31 13:37:20 +00:00
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl - Fix shebangs 2015-05-30 12:31:59 +00:00
p5-bioperl-run
paml
phrap
phred
phylip
phyml
platon
plink
plinkseq
povchem Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
primer3
protomol - Add LICENSE 2015-06-25 09:32:18 +00:00
psi88 - Strip binaries 2015-06-03 17:27:08 +00:00
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio
samtools Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
seaview biology/seaview: Update version 4.5.4=>4.5.4.4 2015-05-22 11:09:23 +00:00
seqan
seqio
seqtools biology/seqtools: 4.33 -> 4.34.1 2015-05-06 20:30:53 +00:00
sim4
ssaha
t_coffee MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
tinker Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene Update Unipro UGENE to version 1.16.2. 2015-05-28 08:11:59 +00:00
velvet
wise
xmolwt
Makefile New port: biology/bcftools 2015-06-05 21:01:13 +00:00