bin/blasta
bin/gb2fasta
bin/gt2fasta
bin/memfile
bin/nrdb
bin/pam
bin/patdb
bin/pir2fasta
bin/sp2fasta
bin/xdformat
bin/xdget
bin/wu-blastall
bin/wu-formatdb
bin/blastn
bin/blastp
bin/blastx
bin/tblastn
bin/tblastx
bin/setdb
bin/pressdb
%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT
%%PORTDOCS%%%%DOCSDIR%%/FAQ-Indexing.html
%%PORTDOCS%%%%DOCSDIR%%/HISTORY
%%PORTDOCS%%%%DOCSDIR%%/LICENSE
%%PORTDOCS%%%%DOCSDIR%%/Memory.html
%%PORTDOCS%%%%DOCSDIR%%/README.html
%%PORTDOCS%%%%DOCSDIR%%/parameters.html
%%PORTDOCS%%%%DOCSDIR%%/parameters.pdf
%%PORTDOCS%%%%DOCSDIR%%/tabular.html
%%DATADIR%%/matrix/aa/nuc.4.4
%%DATADIR%%/matrix/aa/BLOSUM30
%%DATADIR%%/matrix/aa/BLOSUM35
%%DATADIR%%/matrix/aa/BLOSUM40
%%DATADIR%%/matrix/aa/BLOSUM45
%%DATADIR%%/matrix/aa/BLOSUM50
%%DATADIR%%/matrix/aa/BLOSUM55
%%DATADIR%%/matrix/aa/BLOSUM60
%%DATADIR%%/matrix/aa/BLOSUM62
%%DATADIR%%/matrix/aa/BLOSUM65
%%DATADIR%%/matrix/aa/BLOSUM70
%%DATADIR%%/matrix/aa/BLOSUM75
%%DATADIR%%/matrix/aa/BLOSUM80
%%DATADIR%%/matrix/aa/BLOSUM85
%%DATADIR%%/matrix/aa/BLOSUM90
%%DATADIR%%/matrix/aa/BLOSUMN
%%DATADIR%%/matrix/aa/blosum100
%%DATADIR%%/matrix/aa/blosum30
%%DATADIR%%/matrix/aa/blosum35
%%DATADIR%%/matrix/aa/blosum40
%%DATADIR%%/matrix/aa/blosum45
%%DATADIR%%/matrix/aa/blosum50
%%DATADIR%%/matrix/aa/blosum55
%%DATADIR%%/matrix/aa/blosum60
%%DATADIR%%/matrix/aa/blosumn
%%DATADIR%%/matrix/aa/blosum62
%%DATADIR%%/matrix/aa/blosum65
%%DATADIR%%/matrix/aa/blosum70
%%DATADIR%%/matrix/aa/blosum75
%%DATADIR%%/matrix/aa/blosum80
%%DATADIR%%/matrix/aa/blosum85
%%DATADIR%%/matrix/aa/DAYHOFF
%%DATADIR%%/matrix/aa/GONNET
%%DATADIR%%/matrix/aa/IDENTITY
%%DATADIR%%/matrix/aa/MATCH
%%DATADIR%%/matrix/aa/PAM10
%%DATADIR%%/matrix/aa/NUC.4.2
%%DATADIR%%/matrix/aa/NUC.4.4
%%DATADIR%%/matrix/aa/PAM100
%%DATADIR%%/matrix/aa/PAM110
%%DATADIR%%/matrix/aa/PAM120
%%DATADIR%%/matrix/aa/PAM130
%%DATADIR%%/matrix/aa/PAM120.cdi
%%DATADIR%%/matrix/aa/PAM140
%%DATADIR%%/matrix/aa/PAM150
%%DATADIR%%/matrix/aa/PAM160
%%DATADIR%%/matrix/aa/PAM170
%%DATADIR%%/matrix/aa/PAM160.cdi
%%DATADIR%%/matrix/aa/PAM180
%%DATADIR%%/matrix/aa/PAM190
%%DATADIR%%/matrix/aa/PAM20
%%DATADIR%%/matrix/aa/PAM200
%%DATADIR%%/matrix/aa/PAM200.cdi
%%DATADIR%%/matrix/aa/PAM210
%%DATADIR%%/matrix/aa/PAM220
%%DATADIR%%/matrix/aa/PAM230
%%DATADIR%%/matrix/aa/PAM240
%%DATADIR%%/matrix/aa/PAM250
%%DATADIR%%/matrix/aa/PAM250.cdi
%%DATADIR%%/matrix/aa/PAM260
%%DATADIR%%/matrix/aa/PAM270
%%DATADIR%%/matrix/aa/PAM280
%%DATADIR%%/matrix/aa/PAM290
%%DATADIR%%/matrix/aa/PAM30
%%DATADIR%%/matrix/aa/PAM300
%%DATADIR%%/matrix/aa/PAM310
%%DATADIR%%/matrix/aa/PAM320
%%DATADIR%%/matrix/aa/PAM330
%%DATADIR%%/matrix/aa/PAM340
%%DATADIR%%/matrix/aa/PAM350
%%DATADIR%%/matrix/aa/PAM360
%%DATADIR%%/matrix/aa/PAM370
%%DATADIR%%/matrix/aa/PAM380
%%DATADIR%%/matrix/aa/PAM390
%%DATADIR%%/matrix/aa/PAM40
%%DATADIR%%/matrix/aa/PAM40.cdi
%%DATADIR%%/matrix/aa/PAM400
%%DATADIR%%/matrix/aa/PAM410
%%DATADIR%%/matrix/aa/PAM420
%%DATADIR%%/matrix/aa/PAM430
%%DATADIR%%/matrix/aa/PAM440
%%DATADIR%%/matrix/aa/PAM450
%%DATADIR%%/matrix/aa/PAM460
%%DATADIR%%/matrix/aa/PAM470
%%DATADIR%%/matrix/aa/PAM480
%%DATADIR%%/matrix/aa/PAM490
%%DATADIR%%/matrix/aa/PAM50
%%DATADIR%%/matrix/aa/PAM500
%%DATADIR%%/matrix/aa/PAM60
%%DATADIR%%/matrix/aa/PAM70
%%DATADIR%%/matrix/aa/PAM80
%%DATADIR%%/matrix/aa/PAM80.cdi
%%DATADIR%%/matrix/aa/PAM90
%%DATADIR%%/matrix/aa/blosum90
%%DATADIR%%/matrix/aa/pam120.cdi
%%DATADIR%%/matrix/aa/pam160.cdi
%%DATADIR%%/matrix/aa/dayhoff
%%DATADIR%%/matrix/aa/gonnet
%%DATADIR%%/matrix/aa/identity
%%DATADIR%%/matrix/aa/match
%%DATADIR%%/matrix/aa/pam10
%%DATADIR%%/matrix/aa/pam100
%%DATADIR%%/matrix/aa/pam110
%%DATADIR%%/matrix/aa/pam120
%%DATADIR%%/matrix/aa/pam130
%%DATADIR%%/matrix/aa/pam140
%%DATADIR%%/matrix/aa/pam150
%%DATADIR%%/matrix/aa/pam160
%%DATADIR%%/matrix/aa/pam170
%%DATADIR%%/matrix/aa/pam180
%%DATADIR%%/matrix/aa/pam190
%%DATADIR%%/matrix/aa/pam20
%%DATADIR%%/matrix/aa/pam200
%%DATADIR%%/matrix/aa/pam250.cdi
%%DATADIR%%/matrix/aa/pam210
%%DATADIR%%/matrix/aa/pam220
%%DATADIR%%/matrix/aa/pam230
%%DATADIR%%/matrix/aa/pam240
%%DATADIR%%/matrix/aa/pam250
%%DATADIR%%/matrix/aa/pam40.cdi
%%DATADIR%%/matrix/aa/pam260
%%DATADIR%%/matrix/aa/pam270
%%DATADIR%%/matrix/aa/pam280
%%DATADIR%%/matrix/aa/pam290
%%DATADIR%%/matrix/aa/pam30
%%DATADIR%%/matrix/aa/pam300
%%DATADIR%%/matrix/aa/pam310
%%DATADIR%%/matrix/aa/pam320
%%DATADIR%%/matrix/aa/pam330
%%DATADIR%%/matrix/aa/pam340
%%DATADIR%%/matrix/aa/pam350
%%DATADIR%%/matrix/aa/pam360
%%DATADIR%%/matrix/aa/pam370
%%DATADIR%%/matrix/aa/pam380
%%DATADIR%%/matrix/aa/pam390
%%DATADIR%%/matrix/aa/pam40
%%DATADIR%%/matrix/aa/pam80.cdi
%%DATADIR%%/matrix/aa/pam400
%%DATADIR%%/matrix/aa/pam410
%%DATADIR%%/matrix/aa/pam420
%%DATADIR%%/matrix/aa/pam430
%%DATADIR%%/matrix/aa/pam440
%%DATADIR%%/matrix/aa/pam450
%%DATADIR%%/matrix/aa/pam460
%%DATADIR%%/matrix/aa/pam470
%%DATADIR%%/matrix/aa/pam480
%%DATADIR%%/matrix/aa/pam490
%%DATADIR%%/matrix/aa/pam50
%%DATADIR%%/matrix/aa/pam500
%%DATADIR%%/matrix/aa/pam60
%%DATADIR%%/matrix/aa/pam70
%%DATADIR%%/matrix/aa/pam80
%%DATADIR%%/matrix/aa/pam90
%%DATADIR%%/matrix/aa/pam200.cdi
%%DATADIR%%/matrix/aa/PHAT_T70_B66
%%DATADIR%%/matrix/aa/PHAT_T75_B73
%%DATADIR%%/matrix/aa/PHAT_T80_B78
%%DATADIR%%/matrix/aa/PHAT_T85_B82
%%DATADIR%%/matrix/aa/phat_t70_b66
%%DATADIR%%/matrix/aa/phat_t75_b73
%%DATADIR%%/matrix/aa/phat_t80_b78
%%DATADIR%%/matrix/aa/phat_t85_b82
%%DATADIR%%/matrix/aa/nuc.4.2
%%DATADIR%%/matrix/aa/BLOSUM100
%%DATADIR%%/matrix/nt/PUPY.4.4
%%DATADIR%%/matrix/nt/IDENTITY.4.2
%%DATADIR%%/matrix/nt/IDENTITY.4.4
%%DATADIR%%/matrix/nt/identity.4.2
%%DATADIR%%/matrix/nt/pupy.4.2
%%DATADIR%%/matrix/nt/pupy.4.4
%%DATADIR%%/matrix/nt/PUPY.4.2
%%DATADIR%%/matrix/nt/identity.4.4
%%DATADIR%%/matrix/README
%%DATADIR%%/filter/seg
%%DATADIR%%/filter/seg+xnu
%%DATADIR%%/filter/xnu+seg
%%DATADIR%%/filter/nseg
%%DATADIR%%/filter/dust
%%DATADIR%%/filter/nmerge
%%DATADIR%%/filter/xnu
%%DATADIR%%/filter/pmerge
%%DATADIR%%/filter/pseg
%%DATADIR%%/filter/README
%%DATADIR%%/sysblast.sample
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm %%DATADIR%%/matrix/aa
@dirrm %%DATADIR%%/matrix/nt
@dirrm %%DATADIR%%/matrix
@dirrm %%DATADIR%%/filter
@dirrm %%DATADIR%%