From a44229b5cf69d83727da43d6063e803b0e42d81d Mon Sep 17 00:00:00 2001 From: Yuri Victorovich Date: Wed, 3 Oct 2018 07:41:14 +0000 Subject: [PATCH] New port: math/deal.ii: Finite element Differential Equations Analysis Library (DEAL) The official name of the project is deal.II --- math/Makefile | 1 + math/deal.ii/Makefile | 65 +++ math/deal.ii/distinfo | 3 + math/deal.ii/files/patch-doc_CMakeLists.txt | 21 + math/deal.ii/pkg-descr | 24 + math/deal.ii/pkg-plist | 509 ++++++++++++++++++++ 6 files changed, 623 insertions(+) create mode 100644 math/deal.ii/Makefile create mode 100644 math/deal.ii/distinfo create mode 100644 math/deal.ii/files/patch-doc_CMakeLists.txt create mode 100644 math/deal.ii/pkg-descr create mode 100644 math/deal.ii/pkg-plist diff --git a/math/Makefile b/math/Makefile index 996699f06f2b..fc3f7aa2911b 100644 --- a/math/Makefile +++ b/math/Makefile @@ -174,6 +174,7 @@ SUBDIR += cryptominisat SUBDIR += cvc3 SUBDIR += cvc4 + SUBDIR += deal.ii SUBDIR += diehard SUBDIR += dieharder SUBDIR += djbfft diff --git a/math/deal.ii/Makefile b/math/deal.ii/Makefile new file mode 100644 index 000000000000..d60abab96123 --- /dev/null +++ b/math/deal.ii/Makefile @@ -0,0 +1,65 @@ +# $FreeBSD$ + +PORTNAME= deal.II +DISTVERSIONPREFIX= v +DISTVERSION= 9.0.0 +CATEGORIES= math devel + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Finite element Differential Equations Analysis Library (DEAL) + +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libgsl.so:math/gsl \ + libhdf5.so:science/hdf5 \ + libmetis.so:math/metis \ + libsundials_arkode.so:math/sundials \ + libtbb.so:devel/tbb + +USES= cmake:outsource compiler:c++17-lang localbase:ldflags +USE_GITHUB= yes +GH_ACCOUNT= ${PORTNAME:tl:S/.//} +GH_PROJECT= ${PORTNAME:tl:S/.//} +USE_LDCONFIG= yes + +CMAKE_OFF= DEAL_II_ALLOW_BUNDLED DEAL_II_COMPONENT_EXAMPLES \ + DEAL_II_WITH_P4EST DEAL_II_WITH_TRILINOS DEAL_II_WITH_UMFPACK DEAL_II_WITH_SLEPC \ + DEAL_II_WITH_NANOFLANN DEAL_II_WITH_MUPARSER DEAL_II_WITH_ASSIMP DEAL_II_WITH_ARPACK \ + DEAL_II_WITH_ADOLC DEAL_II_WITH_SUNDIALS DEAL_II_WITH_HDF5 + +OPTIONS_DEFINE= LAPACK MPI NETCDF OPENCASCADE PETSC SCALAPACK +OPTIONS_DEFAULT= MPI + +LAPACK_DESC= Build with LAPACK for matrix operations +LAPACK_USES= fortran +LAPACK_CMAKE_BOOL= DEAL_II_WITH_LAPACK +LAPACK_LIB_DEPENDS= libblas.so:math/blas \ + liblapack.so:math/lapack +LAPACK_BROKEN= can't find lapack library + +MPI_USES= fortran +MPI_CMAKE_BOOL= DEAL_II_WITH_MPI +MPI_LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \ + libmpi.so:net/openmpi + +NETCDF_DESC= Compile with Netcdf (only with MPI) +NETCDF_CMAKE_BOOL= DEAL_II_WITH_NETCDF +NETCDF_CMAKE_ON= -DNETCDF_INCLUDE_DIR:STRING=${LOCALBASE}/include -DNETCDF_CPLUSPLUS_LIBRARY:STRING=${LOCALBASE}/lib/libnetcdf_c++4.so +NETCDF_BROKEN= see https://github.com/dealii/dealii/issues/7263 + +OPENCASCADE_DESC= Build with OpenCascade +OPENCASCADE_CMAKE_BOOL= DEAL_II_WITH_OPENCASCADE +OPENCASCADE_CMAKE_ON= -DOPENCASCADE_INCLUDE_DIR:STRING=${LOCALBASE}/include/OpenCASCADE +OPENCASCADE_LIB_DEPENDS= libTKernel.so:cad/opencascade + +PETSC_DESC= Compile with Petsc (only with MPI) +PETSC_CMAKE_BOOL= DEAL_II_WITH_PETSC +PETSC_LIB_DEPENDS= libpetsc.so:science/PETSc +PETSC_BROKEN= see https://github.com/dealii/dealii/issues/7260 + +SCALAPACK_DESC= Compile with ScaLAPACK (only with MPI) +SCALAPACK_CMAKE_BOOL= DEAL_II_WITH_SCALAPACK +SCALAPACK_IMPLIES= MPI LAPACK + +.include diff --git a/math/deal.ii/distinfo b/math/deal.ii/distinfo new file mode 100644 index 000000000000..b4f2f2bc1ed5 --- /dev/null +++ b/math/deal.ii/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1538522671 +SHA256 (dealii-dealii-v9.0.0_GH0.tar.gz) = c9eed69b9909b432102055e843981df181cb96a4d274785feeb70f83a0f5bee8 +SIZE (dealii-dealii-v9.0.0_GH0.tar.gz) = 17629427 diff --git a/math/deal.ii/files/patch-doc_CMakeLists.txt b/math/deal.ii/files/patch-doc_CMakeLists.txt new file mode 100644 index 000000000000..a37add7e2c19 --- /dev/null +++ b/math/deal.ii/files/patch-doc_CMakeLists.txt @@ -0,0 +1,21 @@ +--- doc/CMakeLists.txt.orig 2018-10-03 01:10:49 UTC ++++ doc/CMakeLists.txt +@@ -55,12 +55,12 @@ ENDIF(DEAL_II_COMPONENT_DOCUMENTATION) + # Always install a minimalistic README and LICENSE file: + # + +-INSTALL(FILES +- ${CMAKE_SOURCE_DIR}/README.md +- ${CMAKE_SOURCE_DIR}/LICENSE +- DESTINATION ${DEAL_II_DOCREADME_RELDIR} +- COMPONENT library +- ) ++#INSTALL(FILES ++# ${CMAKE_SOURCE_DIR}/README.md ++# ${CMAKE_SOURCE_DIR}/LICENSE ++# DESTINATION ${DEAL_II_DOCREADME_RELDIR} ++# COMPONENT library ++# ) + + # + # Add a dummy target to make documentation files known to IDEs. diff --git a/math/deal.ii/pkg-descr b/math/deal.ii/pkg-descr new file mode 100644 index 000000000000..5bcc0b704d8f --- /dev/null +++ b/math/deal.ii/pkg-descr @@ -0,0 +1,24 @@ +deal.II - a name that originally meant to indicate that it is the successor to +the Differential Equations Analysis Library - is a C++ program library targeted +at the computational solution of partial differential equations using adaptive +finite elements. It uses state-of-the-art programming techniques to offer you a +modern interface to the complex data structures and algorithms required. + +The main aim of deal.II is to enable rapid development of modern finite element +codes, using among other aspects adaptive meshes and a wide array of tools +classes often used in finite element program. Writing such programs is a +non-trivial task, and successful programs tend to become very large and complex. +We believe that this is best done using a program library that takes care of the +details of grid handling and refinement, handling of degrees of freedom, input +of meshes and output of results in graphics formats, and the like. Likewise, +support for several space dimensions at once is included in a way such that +programs can be written independent of the space dimension without unreasonable +penalties on run-time and memory consumption. + +deal.II is widely used in many academic and commercial projects. For its +creation, its principal authors have received the 2007 J. H. Wilkinson Prize for +Numerical Software. It is also part of the industry standard SPEC CPU 2006 and +SPEC CPU 2017 benchmark suites used to determine the speed of computers and +compilers. + +WWW: https://www.dealii.org/ diff --git a/math/deal.ii/pkg-plist b/math/deal.ii/pkg-plist new file mode 100644 index 000000000000..1ae63a8af0d7 --- /dev/null +++ b/math/deal.ii/pkg-plist @@ -0,0 +1,509 @@ +include/deal.II/algorithms/any_data.h +include/deal.II/algorithms/named_selection.h +include/deal.II/algorithms/newton.h +include/deal.II/algorithms/newton.templates.h +include/deal.II/algorithms/operator.h +include/deal.II/algorithms/operator.templates.h +include/deal.II/algorithms/theta_timestepping.h +include/deal.II/algorithms/theta_timestepping.templates.h +include/deal.II/algorithms/timestep_control.h +include/deal.II/base/aligned_vector.h +include/deal.II/base/array_view.h +include/deal.II/base/auto_derivative_function.h +include/deal.II/base/bounding_box.h +include/deal.II/base/complex_overloads.h +include/deal.II/base/conditional_ostream.h +include/deal.II/base/config.h +include/deal.II/base/convergence_table.h +include/deal.II/base/cuda.h +include/deal.II/base/cuda_size.h +include/deal.II/base/data_out_base.h +include/deal.II/base/derivative_form.h +include/deal.II/base/event.h +include/deal.II/base/exceptions.h +include/deal.II/base/flow_function.h +include/deal.II/base/function.h +include/deal.II/base/function.templates.h +include/deal.II/base/function_bessel.h +include/deal.II/base/function_cspline.h +include/deal.II/base/function_derivative.h +include/deal.II/base/function_lib.h +include/deal.II/base/function_parser.h +include/deal.II/base/function_spherical.h +include/deal.II/base/function_time.h +include/deal.II/base/function_time.templates.h +include/deal.II/base/geometric_utilities.h +include/deal.II/base/geometry_info.h +include/deal.II/base/graph_coloring.h +include/deal.II/base/index_set.h +include/deal.II/base/iterator_range.h +include/deal.II/base/job_identifier.h +include/deal.II/base/linear_index_iterator.h +include/deal.II/base/logstream.h +include/deal.II/base/memory_consumption.h +include/deal.II/base/mg_level_object.h +include/deal.II/base/mpi.h +include/deal.II/base/mpi.templates.h +include/deal.II/base/multithread_info.h +include/deal.II/base/numbers.h +include/deal.II/base/parallel.h +include/deal.II/base/parameter_acceptor.h +include/deal.II/base/parameter_handler.h +include/deal.II/base/parsed_function.h +include/deal.II/base/partitioner.h +include/deal.II/base/partitioner.templates.h +include/deal.II/base/path_search.h +include/deal.II/base/patterns.h +include/deal.II/base/point.h +include/deal.II/base/polynomial.h +include/deal.II/base/polynomial_space.h +include/deal.II/base/polynomials_abf.h +include/deal.II/base/polynomials_adini.h +include/deal.II/base/polynomials_bdm.h +include/deal.II/base/polynomials_bernstein.h +include/deal.II/base/polynomials_integrated_legendre_sz.h +include/deal.II/base/polynomials_nedelec.h +include/deal.II/base/polynomials_p.h +include/deal.II/base/polynomials_piecewise.h +include/deal.II/base/polynomials_rannacher_turek.h +include/deal.II/base/polynomials_raviart_thomas.h +include/deal.II/base/polynomials_rt_bubbles.h +include/deal.II/base/process_grid.h +include/deal.II/base/qprojector.h +include/deal.II/base/quadrature.h +include/deal.II/base/quadrature_lib.h +include/deal.II/base/quadrature_point_data.h +include/deal.II/base/quadrature_selector.h +include/deal.II/base/revision.h +include/deal.II/base/sacado_product_type.h +include/deal.II/base/signaling_nan.h +include/deal.II/base/smartpointer.h +include/deal.II/base/std_cxx11/array.h +include/deal.II/base/std_cxx11/bind.h +include/deal.II/base/std_cxx11/condition_variable.h +include/deal.II/base/std_cxx11/function.h +include/deal.II/base/std_cxx11/iterator.h +include/deal.II/base/std_cxx11/mutex.h +include/deal.II/base/std_cxx11/shared_ptr.h +include/deal.II/base/std_cxx11/thread.h +include/deal.II/base/std_cxx11/tuple.h +include/deal.II/base/std_cxx11/type_traits.h +include/deal.II/base/std_cxx11/unique_ptr.h +include/deal.II/base/std_cxx14/algorithm.h +include/deal.II/base/std_cxx14/memory.h +include/deal.II/base/std_cxx14/utility.h +include/deal.II/base/std_cxx1x/array.h +include/deal.II/base/std_cxx1x/bind.h +include/deal.II/base/std_cxx1x/condition_variable.h +include/deal.II/base/std_cxx1x/function.h +include/deal.II/base/std_cxx1x/mutex.h +include/deal.II/base/std_cxx1x/shared_ptr.h +include/deal.II/base/std_cxx1x/thread.h +include/deal.II/base/std_cxx1x/tuple.h +include/deal.II/base/std_cxx1x/type_traits.h +include/deal.II/base/subscriptor.h +include/deal.II/base/symmetric_tensor.h +include/deal.II/base/symmetric_tensor.templates.h +include/deal.II/base/synchronous_iterator.h +include/deal.II/base/table.h +include/deal.II/base/table_handler.h +include/deal.II/base/table_indices.h +include/deal.II/base/template_constraints.h +include/deal.II/base/tensor.h +include/deal.II/base/tensor_accessors.h +include/deal.II/base/tensor_base.h +include/deal.II/base/tensor_deprecated.h +include/deal.II/base/tensor_function.h +include/deal.II/base/tensor_function.templates.h +include/deal.II/base/tensor_product_polynomials.h +include/deal.II/base/tensor_product_polynomials_bubbles.h +include/deal.II/base/tensor_product_polynomials_const.h +include/deal.II/base/thread_local_storage.h +include/deal.II/base/thread_management.h +include/deal.II/base/time_stepping.h +include/deal.II/base/time_stepping.templates.h +include/deal.II/base/timer.h +include/deal.II/base/types.h +include/deal.II/base/utilities.h +include/deal.II/base/vector_slice.h +include/deal.II/base/vectorization.h +include/deal.II/base/work_stream.h +include/deal.II/differentiation/ad.h +include/deal.II/differentiation/ad/ad_number_traits.h +include/deal.II/differentiation/ad/ad_number_types.h +include/deal.II/differentiation/ad/adolc_math.h +include/deal.II/differentiation/ad/adolc_number_types.h +include/deal.II/differentiation/ad/adolc_product_types.h +include/deal.II/differentiation/ad/sacado_math.h +include/deal.II/differentiation/ad/sacado_number_types.h +include/deal.II/differentiation/ad/sacado_product_types.h +include/deal.II/distributed/grid_refinement.h +include/deal.II/distributed/grid_tools.h +include/deal.II/distributed/p4est_wrappers.h +include/deal.II/distributed/shared_tria.h +include/deal.II/distributed/solution_transfer.h +include/deal.II/distributed/tria.h +include/deal.II/distributed/tria_base.h +include/deal.II/dofs/block_info.h +include/deal.II/dofs/dof_accessor.h +include/deal.II/dofs/dof_accessor.templates.h +include/deal.II/dofs/dof_faces.h +include/deal.II/dofs/dof_handler.h +include/deal.II/dofs/dof_handler_policy.h +include/deal.II/dofs/dof_iterator_selector.h +include/deal.II/dofs/dof_levels.h +include/deal.II/dofs/dof_objects.h +include/deal.II/dofs/dof_renumbering.h +include/deal.II/dofs/dof_tools.h +include/deal.II/dofs/function_map.h +include/deal.II/dofs/number_cache.h +include/deal.II/fe/block_mask.h +include/deal.II/fe/component_mask.h +include/deal.II/fe/fe.h +include/deal.II/fe/fe_abf.h +include/deal.II/fe/fe_base.h +include/deal.II/fe/fe_bdm.h +include/deal.II/fe/fe_bernstein.h +include/deal.II/fe/fe_dg_vector.h +include/deal.II/fe/fe_dg_vector.templates.h +include/deal.II/fe/fe_dgp.h +include/deal.II/fe/fe_dgp_monomial.h +include/deal.II/fe/fe_dgp_nonparametric.h +include/deal.II/fe/fe_dgq.h +include/deal.II/fe/fe_enriched.h +include/deal.II/fe/fe_face.h +include/deal.II/fe/fe_nedelec.h +include/deal.II/fe/fe_nothing.h +include/deal.II/fe/fe_p1nc.h +include/deal.II/fe/fe_poly.h +include/deal.II/fe/fe_poly.templates.h +include/deal.II/fe/fe_poly_face.h +include/deal.II/fe/fe_poly_face.templates.h +include/deal.II/fe/fe_poly_tensor.h +include/deal.II/fe/fe_q.h +include/deal.II/fe/fe_q_base.h +include/deal.II/fe/fe_q_bubbles.h +include/deal.II/fe/fe_q_dg0.h +include/deal.II/fe/fe_q_hierarchical.h +include/deal.II/fe/fe_q_iso_q1.h +include/deal.II/fe/fe_rannacher_turek.h +include/deal.II/fe/fe_raviart_thomas.h +include/deal.II/fe/fe_rt_bubbles.h +include/deal.II/fe/fe_series.h +include/deal.II/fe/fe_system.h +include/deal.II/fe/fe_tools.h +include/deal.II/fe/fe_tools.templates.h +include/deal.II/fe/fe_tools_extrapolate.templates.h +include/deal.II/fe/fe_tools_interpolate.templates.h +include/deal.II/fe/fe_trace.h +include/deal.II/fe/fe_update_flags.h +include/deal.II/fe/fe_values.h +include/deal.II/fe/fe_values_extractors.h +include/deal.II/fe/mapping.h +include/deal.II/fe/mapping_c1.h +include/deal.II/fe/mapping_cartesian.h +include/deal.II/fe/mapping_fe_field.h +include/deal.II/fe/mapping_manifold.h +include/deal.II/fe/mapping_q.h +include/deal.II/fe/mapping_q1.h +include/deal.II/fe/mapping_q1_eulerian.h +include/deal.II/fe/mapping_q_eulerian.h +include/deal.II/fe/mapping_q_generic.h +include/deal.II/gmsh/utilities.h +include/deal.II/grid/cell_id.h +include/deal.II/grid/composition_manifold.h +include/deal.II/grid/filtered_iterator.h +include/deal.II/grid/grid_generator.h +include/deal.II/grid/grid_in.h +include/deal.II/grid/grid_out.h +include/deal.II/grid/grid_refinement.h +include/deal.II/grid/grid_reordering.h +include/deal.II/grid/grid_tools.h +include/deal.II/grid/grid_tools_cache.h +include/deal.II/grid/grid_tools_cache_update_flags.h +include/deal.II/grid/intergrid_map.h +include/deal.II/grid/magic_numbers.h +include/deal.II/grid/manifold.h +include/deal.II/grid/manifold_lib.h +include/deal.II/grid/persistent_tria.h +include/deal.II/grid/tensor_product_manifold.h +include/deal.II/grid/tria.h +include/deal.II/grid/tria_accessor.h +include/deal.II/grid/tria_accessor.templates.h +include/deal.II/grid/tria_boundary.h +include/deal.II/grid/tria_boundary_lib.h +include/deal.II/grid/tria_faces.h +include/deal.II/grid/tria_iterator.h +include/deal.II/grid/tria_iterator.templates.h +include/deal.II/grid/tria_iterator_base.h +include/deal.II/grid/tria_iterator_selector.h +include/deal.II/grid/tria_levels.h +include/deal.II/grid/tria_object.h +include/deal.II/grid/tria_objects.h +include/deal.II/hp/dof_faces.h +include/deal.II/hp/dof_handler.h +include/deal.II/hp/dof_level.h +include/deal.II/hp/fe_collection.h +include/deal.II/hp/fe_values.h +include/deal.II/hp/mapping_collection.h +include/deal.II/hp/q_collection.h +include/deal.II/integrators/advection.h +include/deal.II/integrators/divergence.h +include/deal.II/integrators/elasticity.h +include/deal.II/integrators/grad_div.h +include/deal.II/integrators/l2.h +include/deal.II/integrators/laplace.h +include/deal.II/integrators/local_integrators.h +include/deal.II/integrators/maxwell.h +include/deal.II/integrators/patches.h +include/deal.II/lac/arpack_solver.h +include/deal.II/lac/block_indices.h +include/deal.II/lac/block_linear_operator.h +include/deal.II/lac/block_matrix_array.h +include/deal.II/lac/block_matrix_base.h +include/deal.II/lac/block_sparse_matrix.h +include/deal.II/lac/block_sparse_matrix.templates.h +include/deal.II/lac/block_sparse_matrix_ez.h +include/deal.II/lac/block_sparse_matrix_ez.templates.h +include/deal.II/lac/block_sparsity_pattern.h +include/deal.II/lac/block_vector.h +include/deal.II/lac/block_vector.templates.h +include/deal.II/lac/block_vector_base.h +include/deal.II/lac/chunk_sparse_matrix.h +include/deal.II/lac/chunk_sparse_matrix.templates.h +include/deal.II/lac/chunk_sparsity_pattern.h +include/deal.II/lac/communication_pattern_base.h +include/deal.II/lac/constrained_linear_operator.h +include/deal.II/lac/constraint_matrix.h +include/deal.II/lac/constraint_matrix.templates.h +include/deal.II/lac/cuda_atomic.h +include/deal.II/lac/cuda_solver_direct.h +include/deal.II/lac/cuda_sparse_matrix.h +include/deal.II/lac/cuda_vector.h +include/deal.II/lac/diagonal_matrix.h +include/deal.II/lac/dynamic_sparsity_pattern.h +include/deal.II/lac/eigen.h +include/deal.II/lac/exceptions.h +include/deal.II/lac/filtered_matrix.h +include/deal.II/lac/full_matrix.h +include/deal.II/lac/full_matrix.templates.h +include/deal.II/lac/generic_linear_algebra.h +include/deal.II/lac/householder.h +include/deal.II/lac/identity_matrix.h +include/deal.II/lac/la_parallel_block_vector.h +include/deal.II/lac/la_parallel_block_vector.templates.h +include/deal.II/lac/la_parallel_vector.h +include/deal.II/lac/la_parallel_vector.templates.h +include/deal.II/lac/la_vector.h +include/deal.II/lac/la_vector.templates.h +include/deal.II/lac/lapack_full_matrix.h +include/deal.II/lac/lapack_support.h +include/deal.II/lac/lapack_templates.h +include/deal.II/lac/linear_operator.h +include/deal.II/lac/linear_operator_tools.h +include/deal.II/lac/matrix_block.h +include/deal.II/lac/matrix_iterator.h +include/deal.II/lac/matrix_lib.h +include/deal.II/lac/matrix_lib.templates.h 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+include/deal.II/lac/read_write_vector.h +include/deal.II/lac/read_write_vector.templates.h +include/deal.II/lac/relaxation_block.h +include/deal.II/lac/relaxation_block.templates.h +include/deal.II/lac/scalapack.h +include/deal.II/lac/scalapack.templates.h +include/deal.II/lac/schur_complement.h +include/deal.II/lac/slepc_solver.h +include/deal.II/lac/slepc_spectral_transformation.h +include/deal.II/lac/solver.h +include/deal.II/lac/solver_bicgstab.h +include/deal.II/lac/solver_cg.h +include/deal.II/lac/solver_control.h +include/deal.II/lac/solver_fire.h +include/deal.II/lac/solver_gmres.h +include/deal.II/lac/solver_minres.h +include/deal.II/lac/solver_qmrs.h +include/deal.II/lac/solver_relaxation.h +include/deal.II/lac/solver_richardson.h +include/deal.II/lac/solver_selector.h +include/deal.II/lac/sparse_decomposition.h +include/deal.II/lac/sparse_decomposition.templates.h +include/deal.II/lac/sparse_direct.h +include/deal.II/lac/sparse_ilu.h 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